Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G009600.1 | Wheat | golgi | 99.19 | 97.73 |
| TraesCS4A01G485300.1 | Wheat | cytosol | 99.0 | 97.43 |
| HORVU5Hr1G067090.1 | Barley | cytosol | 98.13 | 93.48 |
| KXG38043 | Sorghum | cytosol | 89.8 | 87.2 |
| Os09t0407950-01 | Rice | plasma membrane | 52.55 | 85.1 |
| Os09t0408000-01 | Rice | cytosol, nucleus | 25.68 | 84.98 |
| Zm00001d033368_P007 | Maize | cytosol | 86.94 | 84.42 |
| VIT_00s1373g00010.t01 | Wine grape | cytosol | 7.65 | 78.85 |
| GSMUA_Achr10P... | Banana | cytosol | 71.83 | 73.24 |
| KRH28498 | Soybean | cytosol | 8.96 | 67.61 |
| Solyc02g090570.2.1 | Tomato | nucleus | 67.23 | 66.73 |
| Bra036092.1-P | Field mustard | cytosol | 63.43 | 65.55 |
| KRH04644 | Soybean | endoplasmic reticulum | 66.04 | 65.47 |
| KRH57890 | Soybean | endoplasmic reticulum | 65.92 | 65.35 |
| AT3G50590.1 | Thale cress | cytosol | 64.8 | 64.56 |
| CDX77930 | Canola | cytosol | 65.3 | 64.38 |
| KRH76964 | Soybean | nucleus | 64.68 | 64.12 |
| CDY17791 | Canola | cytosol | 65.24 | 64.0 |
| VIT_00s0961g00020.t01 | Wine grape | cytosol, extracellular, plastid | 7.21 | 47.54 |
| VIT_00s0783g00010.t01 | Wine grape | cytosol | 15.55 | 44.09 |
| CDY26515 | Canola | cytosol, nucleus, plastid | 6.28 | 39.92 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G009900.1 | EnsemblPlantsGene:TraesCS7A01G009900 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | ncoils:Coil | PANTHER:PTHR19878 | PANTHER:PTHR19878:SF4 | PFscan:PS50082 | PFscan:PS50294 |
| SEG:seg | SMART:SM00320 | SUPFAM:SSF50978 | SUPFAM:SSF69322 | MapMan:22.1.4.4 | : |
Description
No Description!
Coordinates
chr7A:-:4472564..4483221
Molecular Weight (calculated)
174737.0 Da
IEP (calculated)
8.540
GRAVY (calculated)
-0.193
Length
1608 amino acids
Sequence
(BLAST)
(BLAST)
0001: MQWETVQHLD LRHAGGRRGA GAPARPQFDA LTGSKIALVD LGARVVRMAY SPTSSHVIIA ILEDATIRSC DFATEQTLVL HSPEKKTDHV SIDTEVHLAL
0101: TPLEPIVFFG FHKRMSVTVV GTVEGGRPPT KIKTDLKKPI VNLACHPRLP VFYVAYAEGL VRAYNVQTYA VHYTLQLPVD STIKLMGAGA FGFHPTLEWV
0201: FIGDRGGTLL AWDVSTERPN MIGITQAGSQ PITSVSWLPT LKLLVTISKD GGLQVWKTRV IINNNRQPME THFFERAAIE TMDITKILTL QGGEAVYPLP
0301: RIKNLAVHPK FNLAAVIFQD MSATEAAKNK AAYTREGRRQ LFAVLQGARG STAAVLKEKL LALGSSGILA EHQLQAQLQE QHLKGQSKLT ISDVARKAFL
0401: HSHFMEGHAK SGPISRLPLV TISDPSNLLR DIPVCQPFHL ELNFFNQENR VVQYPVRAFY LDGFNLMAHN LSSGADNLYK KLYSTIPSNM ECHPKYISYS
0501: PKQHMFLVVF ELSGPSGVVH EVVLYWEQTD LQTVNSKGSS IKGRDATFLG PDDNQYAILE EDRTSLNLYN LKPIATKEAL ENNAAVLEEE ENTFAENPTA
0601: NPTQKQGPMQ FTFESEVDRI FSSPQESSLL YVISGKHIGL AKLLTGYRLS TDNGLSITTK TDGKKFIKLK PNETVLQVHW QTTLRGPVAG ILTNQRVLIA
0701: SADLDILSSS STKYDRGLPS YRSMLWVGPA LIFSSATAIS MLGWDNKVRS ILSTSFPRSV LLGALNDRLL LVNPTDINPR QKKGVEIRSC LVGLLEPLLI
0801: GFATMQQHFT QKIDLSEVLY QITSRFDSLR VTPKSLDILS KGPPVCGDLA VSLSQAGPQF TQIMRCNYAI KALRFSAALS ILKDEFLRSR DYPQCPPTSH
0901: LFQRFRELGY ACIKYGQFDS AKETFEAIAD HESMLDLFIC HLNPSALRRL AQKLEESGTD PELRRYLERI LRVRSTGWTQ GVFANFAAES MVPKGPEWAG
1001: GNWEIKTPTS MKSIPQWELA GEVMPYMRTT DAAIPSVIAD HIGVYLGVMK GRGNVVEVSE KSLVKAMAAA SSENGQPASS ELALKNKANA AGDSVGDSLA
1101: RQLGVQIASA DEQAKAAEEF KKTLYGVVDA GSSDEDESTS KTKRIQIRIR DKPAAPAVDV NKLKEATKQL GLMAPPISRT RSSGTPQEFS QPAGPAPSAA
1201: PAMPSGAVDF FGTNALVAPP QAPTGGTGPV IGGLGVTAGP IPEDFFQNTV PSQQLANRLP PPGAILQRMA NPESGMNVGR PVPTQNMMGN VGLPDGGVPP
1301: QGPQQGQFPQ QQGQFPQQQG IPMNPIGLPD GGVPPQSQAL PSQPQGFQPA APTPSQPIDL SALEGPGAAK QAAQPPAPKA VRPGQVPRGA PAAECYRMGL
1401: AHLEQNQLTD ALNCLDEAFL ALAKDQSREA DIKAQATICA QYKIAVSLLQ EIARLQRVQG AGTLSAKEEM GRLSRHLASL PIQAKHRINC IRTAIKRNME
1501: VQNFAYAKQM LDLLYSKAPP TKQDELKSLI DMCVQRGLTN KSIDPFEDPS QFCAVTLSRL STIGHDVCDL CGAKFSALSA PGCVICGMGS IKRSDALAGA
1601: GPVASPFG
0101: TPLEPIVFFG FHKRMSVTVV GTVEGGRPPT KIKTDLKKPI VNLACHPRLP VFYVAYAEGL VRAYNVQTYA VHYTLQLPVD STIKLMGAGA FGFHPTLEWV
0201: FIGDRGGTLL AWDVSTERPN MIGITQAGSQ PITSVSWLPT LKLLVTISKD GGLQVWKTRV IINNNRQPME THFFERAAIE TMDITKILTL QGGEAVYPLP
0301: RIKNLAVHPK FNLAAVIFQD MSATEAAKNK AAYTREGRRQ LFAVLQGARG STAAVLKEKL LALGSSGILA EHQLQAQLQE QHLKGQSKLT ISDVARKAFL
0401: HSHFMEGHAK SGPISRLPLV TISDPSNLLR DIPVCQPFHL ELNFFNQENR VVQYPVRAFY LDGFNLMAHN LSSGADNLYK KLYSTIPSNM ECHPKYISYS
0501: PKQHMFLVVF ELSGPSGVVH EVVLYWEQTD LQTVNSKGSS IKGRDATFLG PDDNQYAILE EDRTSLNLYN LKPIATKEAL ENNAAVLEEE ENTFAENPTA
0601: NPTQKQGPMQ FTFESEVDRI FSSPQESSLL YVISGKHIGL AKLLTGYRLS TDNGLSITTK TDGKKFIKLK PNETVLQVHW QTTLRGPVAG ILTNQRVLIA
0701: SADLDILSSS STKYDRGLPS YRSMLWVGPA LIFSSATAIS MLGWDNKVRS ILSTSFPRSV LLGALNDRLL LVNPTDINPR QKKGVEIRSC LVGLLEPLLI
0801: GFATMQQHFT QKIDLSEVLY QITSRFDSLR VTPKSLDILS KGPPVCGDLA VSLSQAGPQF TQIMRCNYAI KALRFSAALS ILKDEFLRSR DYPQCPPTSH
0901: LFQRFRELGY ACIKYGQFDS AKETFEAIAD HESMLDLFIC HLNPSALRRL AQKLEESGTD PELRRYLERI LRVRSTGWTQ GVFANFAAES MVPKGPEWAG
1001: GNWEIKTPTS MKSIPQWELA GEVMPYMRTT DAAIPSVIAD HIGVYLGVMK GRGNVVEVSE KSLVKAMAAA SSENGQPASS ELALKNKANA AGDSVGDSLA
1101: RQLGVQIASA DEQAKAAEEF KKTLYGVVDA GSSDEDESTS KTKRIQIRIR DKPAAPAVDV NKLKEATKQL GLMAPPISRT RSSGTPQEFS QPAGPAPSAA
1201: PAMPSGAVDF FGTNALVAPP QAPTGGTGPV IGGLGVTAGP IPEDFFQNTV PSQQLANRLP PPGAILQRMA NPESGMNVGR PVPTQNMMGN VGLPDGGVPP
1301: QGPQQGQFPQ QQGQFPQQQG IPMNPIGLPD GGVPPQSQAL PSQPQGFQPA APTPSQPIDL SALEGPGAAK QAAQPPAPKA VRPGQVPRGA PAAECYRMGL
1401: AHLEQNQLTD ALNCLDEAFL ALAKDQSREA DIKAQATICA QYKIAVSLLQ EIARLQRVQG AGTLSAKEEM GRLSRHLASL PIQAKHRINC IRTAIKRNME
1501: VQNFAYAKQM LDLLYSKAPP TKQDELKSLI DMCVQRGLTN KSIDPFEDPS QFCAVTLSRL STIGHDVCDL CGAKFSALSA PGCVICGMGS IKRSDALAGA
1601: GPVASPFG
0001: MEWATVQHLD LRHVGRGVSK PLQPHTAAFH PSQAVIAVAV GSHIMEFDAL TGCKIASIDI GSPAVRMLYS PTSSNAVVAI LEDCTIRSCD FETEQTCVLH
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASSFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPKILSQQGG EAVYPLPRIK TLEVHPKLNL AALIFANMVG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEHKG
0401: QSQLTISDIA RKAFLYSHFM EGHAKTAPIS RLPLITVVDT KDQLKDIPVC QPFHLELNFF NKPNRVLHYP VRSFYIEGLN LMAHNLCSGT DNIYKKLYTS
0501: IPGNVEYHSK HIVYSRKRHL FLVVFEFSGA TNEVVLYWEN TGSQLPNSKG STAKGCDAAF IGPNDDQFAI LDEDKTGLSM YILPKLTTME ENEKNLLSEE
0601: NQKKEADPSG IQGPQQFMFE TEVDRVFSTP IESTLMFACN GTQIGLAKLF QGYRLSASDG HYISTQGEGR KSIKLKKHEI ALQVQWQETP RGYVAGILTT
0701: QRVLMVSADF DILASSSTKY DRGLPSFRSL LWVGPALLFS TTTAVCLLGW DGKVRTILSI STPYAALVGA LNDRLLLAHP TDISPKQKKG IEIKSCLVGL
0801: LEPLLIGFST MQQTFEQKVD LSEILYQITT RFDSLRITPR SLDILARSAP VCGDLAVSLA QAGPQFNQVL RCAYAIKALR FSTALSVLKD EFLRSRDYPK
0901: CPPTSLLFQR FRQLGYACIK YGQFDSAKET FEVIGDYESM LDLFICHLNP SAMRRLAQKL EEESGDPELR RYCERILRVR STGWTQGIFA NFAAESMVPK
1001: GPEWGGGNWE IKTPTDMKSI PKWELAGEVM PYMKNEDGTI PSIVADHIGV YLGCVKGRVN VVEIKEDSLV SKPGGLSLLG KPVSDKPLAL PAGESSSMMG
1101: LESLGKQNVA DEQAKAAEEF KKTMYGATGD GSSSDEEGVT KPKKLQIRIR EKPTSTTVDV NKLKEAAKTF KLGDGLGLTM SRTKSINAGS QDLGQMLSQP
1201: SSSTVATTTA PSSASAPVDP FAMSSWTQQP QPVSQPAPPG VAAPIPEDFF QNTIPSVEVA KTLPPPGTYL SKMDQAARAA IAAQGGPNQA NNTPLPDIGL
1301: PDGGVPQQYP QQTSQQPGAP FQTVGLPDGG VRQQYPGQNQ VPSQVPVSTQ PLDLSVLGVP NTGDSGKPPG QPQSPPASVR PGQVPRGAAA PVCFKTGLAH
1401: LEQNQLPDAL SCFDEAFLAL AKDQSRGADI KAQATICAQY KIAVTLLREI LRLQRVQGAS ALSAKDEMAR LSRHLASLPL LAKHRINCIR TAIKRNMEVQ
1501: NYGYSKQMLE LLLSKAPASK QEELRGLVDL CVQRGTSNKS IDPLEDPSQL CSATLSRLST IGYDVCDLCG AKFAALSSPG CIICGMGSIK RSDALAGPAP
1601: VSTPFG
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASSFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPKILSQQGG EAVYPLPRIK TLEVHPKLNL AALIFANMVG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEHKG
0401: QSQLTISDIA RKAFLYSHFM EGHAKTAPIS RLPLITVVDT KDQLKDIPVC QPFHLELNFF NKPNRVLHYP VRSFYIEGLN LMAHNLCSGT DNIYKKLYTS
0501: IPGNVEYHSK HIVYSRKRHL FLVVFEFSGA TNEVVLYWEN TGSQLPNSKG STAKGCDAAF IGPNDDQFAI LDEDKTGLSM YILPKLTTME ENEKNLLSEE
0601: NQKKEADPSG IQGPQQFMFE TEVDRVFSTP IESTLMFACN GTQIGLAKLF QGYRLSASDG HYISTQGEGR KSIKLKKHEI ALQVQWQETP RGYVAGILTT
0701: QRVLMVSADF DILASSSTKY DRGLPSFRSL LWVGPALLFS TTTAVCLLGW DGKVRTILSI STPYAALVGA LNDRLLLAHP TDISPKQKKG IEIKSCLVGL
0801: LEPLLIGFST MQQTFEQKVD LSEILYQITT RFDSLRITPR SLDILARSAP VCGDLAVSLA QAGPQFNQVL RCAYAIKALR FSTALSVLKD EFLRSRDYPK
0901: CPPTSLLFQR FRQLGYACIK YGQFDSAKET FEVIGDYESM LDLFICHLNP SAMRRLAQKL EEESGDPELR RYCERILRVR STGWTQGIFA NFAAESMVPK
1001: GPEWGGGNWE IKTPTDMKSI PKWELAGEVM PYMKNEDGTI PSIVADHIGV YLGCVKGRVN VVEIKEDSLV SKPGGLSLLG KPVSDKPLAL PAGESSSMMG
1101: LESLGKQNVA DEQAKAAEEF KKTMYGATGD GSSSDEEGVT KPKKLQIRIR EKPTSTTVDV NKLKEAAKTF KLGDGLGLTM SRTKSINAGS QDLGQMLSQP
1201: SSSTVATTTA PSSASAPVDP FAMSSWTQQP QPVSQPAPPG VAAPIPEDFF QNTIPSVEVA KTLPPPGTYL SKMDQAARAA IAAQGGPNQA NNTPLPDIGL
1301: PDGGVPQQYP QQTSQQPGAP FQTVGLPDGG VRQQYPGQNQ VPSQVPVSTQ PLDLSVLGVP NTGDSGKPPG QPQSPPASVR PGQVPRGAAA PVCFKTGLAH
1401: LEQNQLPDAL SCFDEAFLAL AKDQSRGADI KAQATICAQY KIAVTLLREI LRLQRVQGAS ALSAKDEMAR LSRHLASLPL LAKHRINCIR TAIKRNMEVQ
1501: NYGYSKQMLE LLLSKAPASK QEELRGLVDL CVQRGTSNKS IDPLEDPSQL CSATLSRLST IGYDVCDLCG AKFAALSSPG CIICGMGSIK RSDALAGPAP
1601: VSTPFG
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J0P2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.