Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 1
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0408000-01 | Rice | cytosol, nucleus | 50.82 | 25.51 |
| VIT_00s0783g00010.t01 | Wine grape | cytosol | 53.69 | 23.1 |
| Solyc02g090570.2.1 | Tomato | nucleus | 56.97 | 8.58 |
| Bra036092.1-P | Field mustard | cytosol | 53.69 | 8.42 |
| GSMUA_Achr10P... | Banana | cytosol | 52.46 | 8.12 |
| AT3G50590.1 | Thale cress | cytosol | 53.28 | 8.05 |
| CDX77930 | Canola | cytosol | 53.69 | 8.03 |
| CDY17791 | Canola | cytosol | 53.69 | 7.99 |
| Zm00001d033368_P007 | Maize | cytosol | 51.64 | 7.61 |
| KXG38043 | Sorghum | cytosol | 51.64 | 7.61 |
| TraesCS7A01G009900.1 | Wheat | cytosol | 47.54 | 7.21 |
| TraesCS7D01G009600.1 | Wheat | golgi | 47.54 | 7.11 |
| TraesCS4A01G485300.1 | Wheat | cytosol | 47.13 | 7.04 |
| HORVU5Hr1G067090.1 | Barley | cytosol | 47.13 | 6.81 |
| VIT_00s0379g00010.t01 | Wine grape | extracellular | 2.05 | 2.5 |
| VIT_00s1501g00010.t01 | Wine grape | extracellular | 2.05 | 2.16 |
| VIT_00s0379g00020.t01 | Wine grape | cytosol | 1.23 | 0.45 |
| Os09t0407950-01 | Rice | plasma membrane | 1.64 | 0.4 |
| VIT_00s0379g00040.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| VIT_00s1373g00010.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.2 | ProteinID:CCB50203 | ProteinID:CCB50203.1 | UniProt:F6HDA8 | EMBL:FN595592 | GO:GO:0000045 |
| GO:GO:0000421 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 |
| PANTHER:PTHR19878 | PANTHER:PTHR19878:SF4 | UniParc:UPI000210AA13 | ArrayExpress:VIT_00s0961g00020 | EnsemblPlantsGene:VIT_00s0961g00020 | EnsemblPlants:VIT_00s0961g00020.t01 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:+:37171924..37174657
Molecular Weight (calculated)
24779.6 Da
IEP (calculated)
5.061
GRAVY (calculated)
-0.039
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPAPLSQPG SMLTSMGVVS GPIPEDFFHN TIPSLQVAAS LRPPGSYLAQ YQGIEGNKVT PNQVNAHVAD VGLPDGGVPL QATQPPVIPL ESIGLPDGGV
101: PPQAMGQAAG LPQPMGQATV PAQSMGQAAV LPQSASQASQ MPISTQPLDL SALGVPGSTN SGNPPARPVS PPASVRSGQV PRGAAASVCF KTGIAHLEQN
201: QLSDALSCFD EAFLALAKDQ SRGADIKAQA TISAQYKIAV TLLQ
101: PPQAMGQAAG LPQPMGQATV PAQSMGQAAV LPQSASQASQ MPISTQPLDL SALGVPGSTN SGNPPARPVS PPASVRSGQV PRGAAASVCF KTGIAHLEQN
201: QLSDALSCFD EAFLALAKDQ SRGADIKAQA TISAQYKIAV TLLQ
0001: MEWATVQHLD LRHVGRGVSK PLQPHTAAFH PSQAVIAVAV GSHIMEFDAL TGCKIASIDI GSPAVRMLYS PTSSNAVVAI LEDCTIRSCD FETEQTCVLH
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASSFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPKILSQQGG EAVYPLPRIK TLEVHPKLNL AALIFANMVG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEHKG
0401: QSQLTISDIA RKAFLYSHFM EGHAKTAPIS RLPLITVVDT KDQLKDIPVC QPFHLELNFF NKPNRVLHYP VRSFYIEGLN LMAHNLCSGT DNIYKKLYTS
0501: IPGNVEYHSK HIVYSRKRHL FLVVFEFSGA TNEVVLYWEN TGSQLPNSKG STAKGCDAAF IGPNDDQFAI LDEDKTGLSM YILPKLTTME ENEKNLLSEE
0601: NQKKEADPSG IQGPQQFMFE TEVDRVFSTP IESTLMFACN GTQIGLAKLF QGYRLSASDG HYISTQGEGR KSIKLKKHEI ALQSFYSLPF NVVYIWPVLF
0701: EIKTIMFRKL TRHVQWQETP RGYVAGILTT QRVLMVSLLW VGPALLFSTT TAVCLLGWDG KVRTILSIST PYAALVGALN DRLLLAHPTD ISPKQKKGIE
0801: IKSCLVGLLE PLLIGFSTMQ QTFEQKVDLS EILYQITTRF DSLRITPRSL DILARSAPVC GDLAVSLAQA GPQFNQVLRC AYAIKALRFS TALSVLKDEF
0901: LRSRDYPKCP PTSLLFQRFR QLGYACIKYG QFDSAKETFE VIGDYESMLD LFICHLNPSA MRRLAQKLEE ESGDPELRRY CERILRVRST GWTQGIFANF
1001: AAESMVPKGP EWGGGNWEIK TPTDMKSIPK WELAGEVMPY MKNEDGTIPS IVADHIGVYL GCVKGRVNVV EIKEDSLVSK PGGLSLLGKP VSDKPLALPA
1101: GESSSMMGLE SLGKQNVADE QAKAAEEFKK TMYGATGDGS SSDEEGVTKP KKLQIRIREK PTSTTVDVNK LKEAAKTFKL GDGLGLTMSR TKSINAGSQD
1201: LGQMLSQPSS STVATTTAPS SASAPVDPFA MSSWTQQPQP VSQPAPPGVA APIPEDFFQN TIPSVEVAKT LPPPGTYLSK MDQAARAAIA AQGGPNQANN
1301: TPLPDIGLPD GGVPQQYPQQ TSQQPGAPFQ TVGLPDGGVR QQYPGQNQVP SQVPVSTQPL DLSVLGVPNT GDSGKPPGQP QSPPASVRPG QVPRGAAAPV
1401: CFKTGLAHLE QNQLPDALSC FDEAFLALAK DQSRGADIKA QATICAQYKI AVTLLREILR LQRVQGASAL SAKDEMARLS RHLASLPLLA KHRINCIRTA
1501: IKRNMEVQNY GYSKQMLELL LSKAPASKQE ELRGLVDLCV QRGTSNKSID PLEDPSQLCS ATLSRLSTIG YDVCDLCGAK FAALSSPGCI ICGMGSIKRS
1601: DALAGPAPVS TPFG
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASSFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPKILSQQGG EAVYPLPRIK TLEVHPKLNL AALIFANMVG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEHKG
0401: QSQLTISDIA RKAFLYSHFM EGHAKTAPIS RLPLITVVDT KDQLKDIPVC QPFHLELNFF NKPNRVLHYP VRSFYIEGLN LMAHNLCSGT DNIYKKLYTS
0501: IPGNVEYHSK HIVYSRKRHL FLVVFEFSGA TNEVVLYWEN TGSQLPNSKG STAKGCDAAF IGPNDDQFAI LDEDKTGLSM YILPKLTTME ENEKNLLSEE
0601: NQKKEADPSG IQGPQQFMFE TEVDRVFSTP IESTLMFACN GTQIGLAKLF QGYRLSASDG HYISTQGEGR KSIKLKKHEI ALQSFYSLPF NVVYIWPVLF
0701: EIKTIMFRKL TRHVQWQETP RGYVAGILTT QRVLMVSLLW VGPALLFSTT TAVCLLGWDG KVRTILSIST PYAALVGALN DRLLLAHPTD ISPKQKKGIE
0801: IKSCLVGLLE PLLIGFSTMQ QTFEQKVDLS EILYQITTRF DSLRITPRSL DILARSAPVC GDLAVSLAQA GPQFNQVLRC AYAIKALRFS TALSVLKDEF
0901: LRSRDYPKCP PTSLLFQRFR QLGYACIKYG QFDSAKETFE VIGDYESMLD LFICHLNPSA MRRLAQKLEE ESGDPELRRY CERILRVRST GWTQGIFANF
1001: AAESMVPKGP EWGGGNWEIK TPTDMKSIPK WELAGEVMPY MKNEDGTIPS IVADHIGVYL GCVKGRVNVV EIKEDSLVSK PGGLSLLGKP VSDKPLALPA
1101: GESSSMMGLE SLGKQNVADE QAKAAEEFKK TMYGATGDGS SSDEEGVTKP KKLQIRIREK PTSTTVDVNK LKEAAKTFKL GDGLGLTMSR TKSINAGSQD
1201: LGQMLSQPSS STVATTTAPS SASAPVDPFA MSSWTQQPQP VSQPAPPGVA APIPEDFFQN TIPSVEVAKT LPPPGTYLSK MDQAARAAIA AQGGPNQANN
1301: TPLPDIGLPD GGVPQQYPQQ TSQQPGAPFQ TVGLPDGGVR QQYPGQNQVP SQVPVSTQPL DLSVLGVPNT GDSGKPPGQP QSPPASVRPG QVPRGAAAPV
1401: CFKTGLAHLE QNQLPDALSC FDEAFLALAK DQSRGADIKA QATICAQYKI AVTLLREILR LQRVQGASAL SAKDEMARLS RHLASLPLLA KHRINCIRTA
1501: IKRNMEVQNY GYSKQMLELL LSKAPASKQE ELRGLVDLCV QRGTSNKSID PLEDPSQLCS ATLSRLSTIG YDVCDLCGAK FAALSSPGCI ICGMGSIKRS
1601: DALAGPAPVS TPFG
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J0P2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.