Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s1373g00010.t01 | Wine grape | cytosol | 8.58 | 89.1 |
| KRH28498 | Soybean | cytosol | 10.49 | 79.81 |
| Bra036092.1-P | Field mustard | cytosol | 72.22 | 75.19 |
| KRH57890 | Soybean | endoplasmic reticulum | 74.07 | 73.98 |
| AT3G50590.1 | Thale cress | cytosol | 73.64 | 73.92 |
| CDX77930 | Canola | cytosol | 74.38 | 73.88 |
| KRH04644 | Soybean | endoplasmic reticulum | 73.64 | 73.55 |
| CDY17791 | Canola | cytosol | 74.38 | 73.52 |
| KRH76964 | Soybean | nucleus | 72.72 | 72.63 |
| GSMUA_Achr10P... | Banana | cytosol | 70.49 | 72.42 |
| Os09t0407950-01 | Rice | plasma membrane | 41.98 | 68.48 |
| KXG38043 | Sorghum | cytosol | 68.95 | 67.45 |
| TraesCS7A01G009900.1 | Wheat | cytosol | 66.73 | 67.23 |
| TraesCS7D01G009600.1 | Wheat | golgi | 67.65 | 67.16 |
| TraesCS4A01G485300.1 | Wheat | cytosol | 67.65 | 67.07 |
| Zm00001d033368_P007 | Maize | cytosol | 67.28 | 65.82 |
| Os09t0408000-01 | Rice | cytosol, nucleus | 19.51 | 65.02 |
| HORVU5Hr1G067090.1 | Barley | cytosol | 67.72 | 64.99 |
| VIT_00s0961g00020.t01 | Wine grape | cytosol, extracellular, plastid | 8.58 | 56.97 |
| VIT_00s0783g00010.t01 | Wine grape | cytosol | 17.16 | 49.03 |
| CDY26515 | Canola | cytosol, nucleus, plastid | 6.79 | 43.48 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:22.1.4.4 | GO:GO:0000045 | GO:GO:0000421 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005886 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:K4BCK6 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR19878 | PANTHER:PTHR19878:SF4 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:Solyc02g090570.2 |
| EnsemblPlants:Solyc02g090570.2.1 | UniParc:UPI0002769252 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2:+:52103544..52124191
Molecular Weight (calculated)
176789.0 Da
IEP (calculated)
8.266
GRAVY (calculated)
-0.127
Length
1620 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEWATLQHLD LRHVGRSSKS LQPHAAAFHP TQALLAVAVG SQIIEFDAYT GSKIASIDIG SPVVRMAYSP TSGHCVIAIL EDCTMRSCDF DAEQTCVLHS
0101: PEKRTERISS DTEVHLALTP LQPVVFFGFH RRMSVTVVGT VEGGKAPTKI KTDLKKPIVN LACHPRLPVL YVAYAEGLIR AYNIHTYAVH YTLQLDNTIK
0201: LVGAGAFAFH PTLEWLFIGD RRGTLLAWDV STERPMMIGI TQVGSQPITS VSWLPMLRLL VTLSKDGNIQ VWKTRVVLNP NKPSMQTNFF EPAAIESIDI
0301: PRILSQQGGE AVYPLPRIRA LEVHPKLNLS ALLFMNLTGA DNRKNRAAFT RDGRKQLFAV LQGARGSSAS VLKEKLSALG SSGILADHQL KAQLQEHYLK
0401: GQSQLTISDI ARKAFLYSHF MEGHAKTVPI SRLPLITILD TKHYLRDVPV CQPFHLDLNF FNKENRVLHY PVRTFYVEGS NLMAYNLSSG VENVYKKLYP
0501: SIPGNVEFHP KYIIYGKKQH LFLIVYEFSG ATNEVVLYWE NTDTQLANSK GTTIKGLDAA FIGPNENHYA ILDEDKTGLS LYILPGTALQ VLDEKNGAID
0601: QNQSTDTDGT SKGPMQFMFE TEVHRIFSTP IESTLVFASH GDQIGLVKLV QNYRLSNADG HYISTKAEGR KFIKLKVNEI VLQVQWQETL RGYVAGVLTT
0701: HRVLIVSADL DILACSSTKF DKGLPSISLD AFLLLFQSIL WLGPALLFST ATAVSVLGWD GKVRTILSIS MPNAVLLGAL NDRLLLANPT DINPRQKKGV
0801: EIKNCLVGLL EPLLVGFSTM QQHFEQKLDL SEILYQITSR FDSLRITPRS LDILARGPPV CGDLAVSLSQ SGPQFTQVLR GTYAIKALRF STALSVLKDE
0901: FLRSRDYPRC PPTSHLFQRF RQLGYACIKY AQFDNAKETF EVISDYESLL DLFICHLNPS AMRRLAQKLE DESADSELRR YCERILRVRS TGWTQGIFAN
1001: FAAESMVPKG SEWGGGNWEI KTPTNLKSIP QWELAAEVMP YMRTDDGTIP SIVTDHIGVY LGLIKGRGNI VEVREDSLVK AFKAENAKDK ANEPQKSLAA
1101: SAANQVKGLP EGEMLMGLES LGKIVASSGV VDEQTKAEEE FKKSLYGSAA DGTSSDEEET SKTKKLHIRI RDKPVTSATV DVNKIKEATK QLGLPISRTK
1201: SLTSSSPELS LLVPPPSSAT NGSVTAPVVS TSADPFGTNS LTQSASMPNL APKAVGAGVA AGPIPEDFFQ NTISSVHVAA SLPPPGTYLS KLDQNSQGAE
1301: ATKMQPSQGG ASAVDVGLPD GGVPPQATQR PVSLDVVGLP DGGVPPQQFA QPSGLQPHVQ MSNPPVSNQP LDLSSLEAPG SGQPSARSSS PPKAVRPGQV
1401: PRGAVAPLCF KTGLAHLEQN QLPDALSCFD EAFLALAKDQ SRGADIKAQA TICAQYKIAV TLLQEISRLQ RVQGPSAISA KDEMARLSRH LGSLPLLAKH
1501: RINCIRTAIK RNMDVQNYGY SKQMLELLLS KAPPGKQDEL RSLVDICVQR GLSNKSIDPQ EDPSQFCAAT LSRLSTIGYD VCDLCGAKFS ALSSPGCIIC
1601: GMGSIKRSDA LVVPVPSPFG
0101: PEKRTERISS DTEVHLALTP LQPVVFFGFH RRMSVTVVGT VEGGKAPTKI KTDLKKPIVN LACHPRLPVL YVAYAEGLIR AYNIHTYAVH YTLQLDNTIK
0201: LVGAGAFAFH PTLEWLFIGD RRGTLLAWDV STERPMMIGI TQVGSQPITS VSWLPMLRLL VTLSKDGNIQ VWKTRVVLNP NKPSMQTNFF EPAAIESIDI
0301: PRILSQQGGE AVYPLPRIRA LEVHPKLNLS ALLFMNLTGA DNRKNRAAFT RDGRKQLFAV LQGARGSSAS VLKEKLSALG SSGILADHQL KAQLQEHYLK
0401: GQSQLTISDI ARKAFLYSHF MEGHAKTVPI SRLPLITILD TKHYLRDVPV CQPFHLDLNF FNKENRVLHY PVRTFYVEGS NLMAYNLSSG VENVYKKLYP
0501: SIPGNVEFHP KYIIYGKKQH LFLIVYEFSG ATNEVVLYWE NTDTQLANSK GTTIKGLDAA FIGPNENHYA ILDEDKTGLS LYILPGTALQ VLDEKNGAID
0601: QNQSTDTDGT SKGPMQFMFE TEVHRIFSTP IESTLVFASH GDQIGLVKLV QNYRLSNADG HYISTKAEGR KFIKLKVNEI VLQVQWQETL RGYVAGVLTT
0701: HRVLIVSADL DILACSSTKF DKGLPSISLD AFLLLFQSIL WLGPALLFST ATAVSVLGWD GKVRTILSIS MPNAVLLGAL NDRLLLANPT DINPRQKKGV
0801: EIKNCLVGLL EPLLVGFSTM QQHFEQKLDL SEILYQITSR FDSLRITPRS LDILARGPPV CGDLAVSLSQ SGPQFTQVLR GTYAIKALRF STALSVLKDE
0901: FLRSRDYPRC PPTSHLFQRF RQLGYACIKY AQFDNAKETF EVISDYESLL DLFICHLNPS AMRRLAQKLE DESADSELRR YCERILRVRS TGWTQGIFAN
1001: FAAESMVPKG SEWGGGNWEI KTPTNLKSIP QWELAAEVMP YMRTDDGTIP SIVTDHIGVY LGLIKGRGNI VEVREDSLVK AFKAENAKDK ANEPQKSLAA
1101: SAANQVKGLP EGEMLMGLES LGKIVASSGV VDEQTKAEEE FKKSLYGSAA DGTSSDEEET SKTKKLHIRI RDKPVTSATV DVNKIKEATK QLGLPISRTK
1201: SLTSSSPELS LLVPPPSSAT NGSVTAPVVS TSADPFGTNS LTQSASMPNL APKAVGAGVA AGPIPEDFFQ NTISSVHVAA SLPPPGTYLS KLDQNSQGAE
1301: ATKMQPSQGG ASAVDVGLPD GGVPPQATQR PVSLDVVGLP DGGVPPQQFA QPSGLQPHVQ MSNPPVSNQP LDLSSLEAPG SGQPSARSSS PPKAVRPGQV
1401: PRGAVAPLCF KTGLAHLEQN QLPDALSCFD EAFLALAKDQ SRGADIKAQA TICAQYKIAV TLLQEISRLQ RVQGPSAISA KDEMARLSRH LGSLPLLAKH
1501: RINCIRTAIK RNMDVQNYGY SKQMLELLLS KAPPGKQDEL RSLVDICVQR GLSNKSIDPQ EDPSQFCAAT LSRLSTIGYD VCDLCGAKFS ALSSPGCIIC
1601: GMGSIKRSDA LVVPVPSPFG
0001: MEWATVQHLD LRHVGRGVSK PLQPHTAAFH PSQAVIAVAV GSHIMEFDAL TGCKIASIDI GSPAVRMLYS PTSSNAVVAI LEDCTIRSCD FETEQTCVLH
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASSFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPKILSQQGG EAVYPLPRIK TLEVHPKLNL AALIFANMVG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEHKG
0401: QSQLTISDIA RKAFLYSHFM EGHAKTAPIS RLPLITVVDT KDQLKDIPVC QPFHLELNFF NKPNRVLHYP VRSFYIEGLN LMAHNLCSGT DNIYKKLYTS
0501: IPGNVEYHSK HIVYSRKRHL FLVVFEFSGA TNEVVLYWEN TGSQLPNSKG STAKGCDAAF IGPNDDQFAI LDEDKTGLSM YILPKLTTME ENEKNLLSEE
0601: NQKKEADPSG IQGPQQFMFE TEVDRVFSTP IESTLMFACN GTQIGLAKLF QGYRLSASDG HYISTQGEGR KSIKLKKHEI ALQVQWQETP RGYVAGILTT
0701: QRVLMVSADF DILASSSTKY DRGLPSFRSL LWVGPALLFS TTTAVCLLGW DGKVRTILSI STPYAALVGA LNDRLLLAHP TDISPKQKKG IEIKSCLVGL
0801: LEPLLIGFST MQQTFEQKVD LSEILYQITT RFDSLRITPR SLDILARSAP VCGDLAVSLA QAGPQFNQVL RCAYAIKALR FSTALSVLKD EFLRSRDYPK
0901: CPPTSLLFQR FRQLGYACIK YGQFDSAKET FEVIGDYESM LDLFICHLNP SAMRRLAQKL EEESGDPELR RYCERILRVR STGWTQGIFA NFAAESMVPK
1001: GPEWGGGNWE IKTPTDMKSI PKWELAGEVM PYMKNEDGTI PSIVADHIGV YLGCVKGRVN VVEIKEDSLV SKPGGLSLLG KPVSDKPLAL PAGESSSMMG
1101: LESLGKQNVA DEQAKAAEEF KKTMYGATGD GSSSDEEGVT KPKKLQIRIR EKPTSTTVDV NKLKEAAKTF KLGDGLGLTM SRTKSINAGS QDLGQMLSQP
1201: SSSTVATTTA PSSASAPVDP FAMSSWTQQP QPVSQPAPPG VAAPIPEDFF QNTIPSVEVA KTLPPPGTYL SKMDQAARAA IAAQGGPNQA NNTPLPDIGL
1301: PDGGVPQQYP QQTSQQPGAP FQTVGLPDGG VRQQYPGQNQ VPSQVPVSTQ PLDLSVLGVP NTGDSGKPPG QPQSPPASVR PGQVPRGAAA PVCFKTGLAH
1401: LEQNQLPDAL SCFDEAFLAL AKDQSRGADI KAQATICAQY KIAVTLLREI LRLQRVQGAS ALSAKDEMAR LSRHLASLPL LAKHRINCIR TAIKRNMEVQ
1501: NYGYSKQMLE LLLSKAPASK QEELRGLVDL CVQRGTSNKS IDPLEDPSQL CSATLSRLST IGYDVCDLCG AKFAALSSPG CIICGMGSIK RSDALAGPAP
1601: VSTPFG
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASSFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPKILSQQGG EAVYPLPRIK TLEVHPKLNL AALIFANMVG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEHKG
0401: QSQLTISDIA RKAFLYSHFM EGHAKTAPIS RLPLITVVDT KDQLKDIPVC QPFHLELNFF NKPNRVLHYP VRSFYIEGLN LMAHNLCSGT DNIYKKLYTS
0501: IPGNVEYHSK HIVYSRKRHL FLVVFEFSGA TNEVVLYWEN TGSQLPNSKG STAKGCDAAF IGPNDDQFAI LDEDKTGLSM YILPKLTTME ENEKNLLSEE
0601: NQKKEADPSG IQGPQQFMFE TEVDRVFSTP IESTLMFACN GTQIGLAKLF QGYRLSASDG HYISTQGEGR KSIKLKKHEI ALQVQWQETP RGYVAGILTT
0701: QRVLMVSADF DILASSSTKY DRGLPSFRSL LWVGPALLFS TTTAVCLLGW DGKVRTILSI STPYAALVGA LNDRLLLAHP TDISPKQKKG IEIKSCLVGL
0801: LEPLLIGFST MQQTFEQKVD LSEILYQITT RFDSLRITPR SLDILARSAP VCGDLAVSLA QAGPQFNQVL RCAYAIKALR FSTALSVLKD EFLRSRDYPK
0901: CPPTSLLFQR FRQLGYACIK YGQFDSAKET FEVIGDYESM LDLFICHLNP SAMRRLAQKL EEESGDPELR RYCERILRVR STGWTQGIFA NFAAESMVPK
1001: GPEWGGGNWE IKTPTDMKSI PKWELAGEVM PYMKNEDGTI PSIVADHIGV YLGCVKGRVN VVEIKEDSLV SKPGGLSLLG KPVSDKPLAL PAGESSSMMG
1101: LESLGKQNVA DEQAKAAEEF KKTMYGATGD GSSSDEEGVT KPKKLQIRIR EKPTSTTVDV NKLKEAAKTF KLGDGLGLTM SRTKSINAGS QDLGQMLSQP
1201: SSSTVATTTA PSSASAPVDP FAMSSWTQQP QPVSQPAPPG VAAPIPEDFF QNTIPSVEVA KTLPPPGTYL SKMDQAARAA IAAQGGPNQA NNTPLPDIGL
1301: PDGGVPQQYP QQTSQQPGAP FQTVGLPDGG VRQQYPGQNQ VPSQVPVSTQ PLDLSVLGVP NTGDSGKPPG QPQSPPASVR PGQVPRGAAA PVCFKTGLAH
1401: LEQNQLPDAL SCFDEAFLAL AKDQSRGADI KAQATICAQY KIAVTLLREI LRLQRVQGAS ALSAKDEMAR LSRHLASLPL LAKHRINCIR TAIKRNMEVQ
1501: NYGYSKQMLE LLLSKAPASK QEELRGLVDL CVQRGTSNKS IDPLEDPSQL CSATLSRLST IGYDVCDLCG AKFAALSSPG CIICGMGSIK RSDALAGPAP
1601: VSTPFG
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J0P2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.