Factsheet for Solyc01g102510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082530.1.1
Solyc02g090570.2.1
Solyc03g116600.2.1
Solyc04g082560.2.1
Solyc05g053650.2.1
Solyc06g068080.2.1
Solyc08g022210.2.1
Solyc09g091750.2.1
Solyc10g078790.1.1
Solyc11g068640.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24710.1	Solyc05g053650.2.1	AT1G04810.1	24529374
AT5G24710.1	Solyc09g091750.2.1	AT1G04810.1	24529374
AT5G24710.1	Solyc03g116600.2.1	AT1G15370.1	24529374
AT5G24710.1	Solyc06g068080.2.1	AT1G15370.1	24529374
AT5G24710.1	Solyc02g082530.1.1	AT1G20760.1	24529374
AT5G24710.1	Solyc04g082560.2.1	AT1G20760.1	24529374
AT5G24710.1	Solyc08g022210.2.1	AT2G05830.1	24529374
AT5G24710.1	Solyc11g068640.1.1	AT3G01780.1	24529374
AT5G24710.1	Solyc02g090570.2.1	AT3G50590.1	24529374
AT5G24710.1	Solyc10g078790.1.1	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046936	Potato	mitochondrion	93.79	95.32
KRG96637	Soybean	endoplasmic reticulum	63.67	80.8
KRG99486	Soybean	endoplasmic reticulum	16.6	76.53
KRG89827	Soybean	cytosol	18.34	76.45
CDY19826	Canola	mitochondrion	65.41	75.71
GSMUA_Achr1P28020_001	Banana	mitochondrion	65.76	75.32
KRH68370	Soybean	endoplasmic reticulum	69.8	74.04
GSMUA_Achr6P21400_001	Banana	mitochondrion	67.85	73.6
AT5G24710.1	Thale cress	mitochondrion	68.83	71.68
HORVU1Hr1G042290.1	Barley	mitochondrion	3.84	70.51
TraesCS3B01G263200.1	Wheat	golgi, unclear	66.81	70.44
TraesCS3A01G236500.2	Wheat	mitochondrion	66.53	70.35
CDX87116	Canola	mitochondrion	67.43	70.33
Os01t0653800-02	Rice	plasma membrane	67.5	70.3
KXG33009	Sorghum	mitochondrion	67.36	70.0
TraesCS3D01G237000.1	Wheat	mitochondrion	67.02	68.89
Zm00001d044026_P011	Maize	mitochondrion	67.02	66.05
Zm00001d011483_P004	Maize	mitochondrion	66.6	63.71
VIT_08s0056g00040.t01	Wine grape	cytosol	71.69	56.36
Os05t0297001-01	Rice	extracellular	2.44	50.0
Bra028077.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, plastid	5.44	45.61
Os01t0653350-00	Rice	mitochondrion	4.81	30.13

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.1.4.4	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:K4B1H9	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR45521	SMART:SM00320
SUPFAM:SSF50978	EnsemblPlantsGene:Solyc01g102510.2	EnsemblPlants:Solyc01g102510.2.1	TMHMM:TMhelix	UniParc:UPI0002767C62	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:91295865..91307591

Molecular Weight (calculated)

152854.0 Da

IEP (calculated)

7.725

GRAVY (calculated)

-0.053

Length

1434 amino acids

Sequence
(BLAST)

0001: MLRLRAFRPT NDKIVKIQMH PTHPWLVTAD ASDHVSVWNW EHRQIIYELK PGGVDERRLV GAKLEKLAEG ESEPRGKPTE AIRGGSVKQV SFYDDDVRFW
0101: QLWRNQSAAA ESPAAAGHVT STFTSPAAST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNRSLLCM VFLSKTTAVD GPLVAFGGSD GVIRVLSMIT
0201: WKLARRYTGG HKGAISCLMN FMAASGESLL VSGGSDGLLV LWSADNALDS RELVPKLSLK AHDGGVIAVE LSRVIGNAPQ LITIGADKTL AIWDTVSFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWAV EHPTYSALTR PLCELSALVP PQLLVSHKKL KVYSMVAHPL QPHLVATGTN IGIILCEFDQ
0401: KSLPPVAVLP TPTESREHTA VYVVERELKL LQFQLSNTTA PALGSNGSLS DTGRFRGEIP EQLHVKQTKK HITTPAPHDS YSVLSVSSSG KYLAIVWPDI
0501: PYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FALLESALTP RIPIIPKGSS RKAKEAAAAA AQAAAAAASA ASAATVQVRI LLDDGTSNVL MKSVGSRSEP
0601: VIGLHGGALL GVAYRTSRRV SAAAATAIST IQSMPLSGYG GSSVSSFSTM EDGSQKSVAE AAPQNFQLYS WETFQPVGGL LPQPDWTAWD QTVEYCAFGY
0701: PQHIVICSLR PQFRYLGDVA IPFATGAVWQ RRQLFVATPT TVECVFVDAG VAPIDIETKR RKEEMKLKEA QSRAIAEHGE LALITVDNQQ SNPQERIALR
0801: PPMLQVVRLA SFQHAPSIPP FLSLPRQSKV DGDASSVLKE MEARKANEVA VGGGGVAVAV TRFPAEQTRP VGPLVIVGVR DGVLWLIDRY MCAHAISLSH
0901: PGIRCRCLAA YGDAVSAVKW ASRLGREHHD DLAQFMLGMG YATEALHLPG ISKRLEFDLA LQSNDLRRAL QCLLTMSNSR DIGQETVGLD LNDLMNMTKK
1001: KENVVEAVQG VVKFAKEFME LIDAADATAQ ADIAREALKR LAAAGSIKGA LRGQELRGVA LRLANHGELT RLSNLVNNLI SVGAGREAAF AAALLGDNVL
1101: MEKAWQETGM LAEAVLHAHA HGRPSMRTLV QSWNKMLQKE LEHTPSMKTD AAAAFLASLE GSKLTSLADA AKKPPIEILP PGMASLYGPN PGQAKPLLGK
1201: PGLPQPGKPL LLEGSKTTAP IASVPAGSNT PATSESGVPL KSENGASTTP ESSNPPASDS GAAPASDSGA APASDSGAAP ASETGAAPTT ETGAAPPATE
1301: IGATPPVIES GAASATETGA TPAESSTTQT SNLDSSVAAD AVVPATPALN ESDYLALVPS TSAPAEPTTI GAIVPSTGPP PATDNKKPSV PGINMPVSCD
1401: APFRGLLLFQ HLIASVFTVC FMVFKLTSRF QFYH

Best Arabidopsis Sequence Match ( AT5G24710.1 )
(BLAST)

0001: MLRARAFRQT NGKIVKIQVH PTHPWLVTAD DSDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG ESDYKAKPTE AIRGGSVKQV KFYDDDVRYW
0101: QLWRNRSAAA ESPSAVNHLT SAFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSGGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTGG HKGSIYCLMN FMASSGEALL VSGGSDGLLV LWSADHGADS RELVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHRKL RVYCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAPLP ALPGSRENSA IYILGRELKL LNFQLSNTAN PSLGNNSALS ESGLSKGDPG EQLTVKQTKK QIVAPVPHDS YSVLSVSSSG KYVAVVWPDI
0501: LYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FAILESVLPH RMPIIPKGGS SRKAKEAAAA AAQAAAAASA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVAATAIST IQSMPLSGFG NSNVSSFSSY DDGFSSQKSA ESAPLNYQLY SWENFEPVGG MLPQPEWTAW DQTVEYCAFA
0701: YQQYMVISSL RPQYRYLGDV AIAHATGAVW HRRQLFVATP TTIECVFVDA GVSEIDIETR KMKEEMKLKE AQARAVAEHG ELALITVEGS QAAKQERISL
0801: RPPMLQVVRL ASFQNAPSVP PFLSLPRQSR GDSDDIMDER RVNEVAVGGG GVSVAVTRFP VEQKRPVGPL VVAGVRDGVL WLIDRYMCAH AISLNHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALHCLL TMSNSKDIGQ DGVGLDLSDI LSLTATKKED
1001: VVEAVEGIVK FAKEFLDLID AADATGHADI AREALKRLAT AGSVKGALQG HELRGLSLRL ANHGELTRLS GLVNNLISIG LGRESAFSAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAHAHGR PTLKNLVQAW NKTLQKEVEK APSSKTDAAS AFLASLEDPK LTSLSDASRK PPIEILPPGM SSIFASITAP KKPLLTQKTA
1201: QPEVAKPLAL EEPTKPLAIE APPSSEAPQT ESAPETAAAA ESPAPETAAV AESPAPGTAA VAEAPASETA AAPVDGPVTE TVSEPPPVEK EETSLEEKSD
1301: PSSTPNTETA TSTENTSQTT TTPESVTTAP PEPITTAPPE TVTTTAVKPT ENAATERRVT NYPPIRSQPI DFDFLNG

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KIH8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.