CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90331
KRG94459
KRH02873
KRH04644
KRH06999
KRH09738
KRH12557
KRH28498
KRH37507
KRH41754
KRH44443
KRH47463
KRH51589
KRH57890
KRH60454
KRH60909
KRH76964

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24710.1	KRH41754	AT1G04810.1	24529374
AT5G24710.1	KRH60454	AT1G04810.1	24529374
AT5G24710.1	KRH09738	AT1G15370.1	24529374
AT5G24710.1	KRH44443	AT1G15370.1	24529374
AT5G24710.1	KRH47463	AT1G15370.1	24529374
AT5G24710.1	KRH51589	AT1G20760.1	24529374
AT5G24710.1	KRH60909	AT1G20760.1	24529374
AT5G24710.1	KRH12557	AT2G05830.1	24529374
AT5G24710.1	KRH37507	AT2G05830.1	24529374
AT5G24710.1	KRG94459	AT3G01780.1	24529374
AT5G24710.1	KRH06999	AT3G01780.1	24529374
AT5G24710.1	KRH04644	AT3G50590.1	24529374
AT5G24710.1	KRH28498	AT3G50590.1	24529374
AT5G24710.1	KRH57890	AT3G50590.1	24529374
AT5G24710.1	KRH76964	AT3G50590.1	24529374
AT5G24710.1	KRG90331	AT5G57460.1	24529374
AT5G24710.1	KRH02873	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96637	Soybean	endoplasmic reticulum	81.36	97.35
KRG89827	Soybean	cytosol	23.96	94.19
KRG99486	Soybean	endoplasmic reticulum	21.38	92.93
CDY19826	Canola	mitochondrion	71.15	77.64
GSMUA_Achr1P28020_001	Banana	mitochondrion	69.75	75.32
GSMUA_Achr6P21400_001	Banana	mitochondrion	72.56	74.21
AT5G24710.1	Thale cress	mitochondrion	75.15	73.78
CDX87116	Canola	mitochondrion	73.59	72.36
TraesCS3B01G263200.1	Wheat	golgi, unclear	71.89	71.47
TraesCS3A01G236500.2	Wheat	mitochondrion	71.52	71.31
Os01t0653800-02	Rice	plasma membrane	72.26	70.95
PGSC0003DMT400046936	Potato	mitochondrion	73.67	70.59
KXG33009	Sorghum	mitochondrion	71.52	70.07
TraesCS3D01G237000.1	Wheat	mitochondrion	72.04	69.82
Solyc01g102510.2.1	Tomato	nucleus	74.04	69.8
Zm00001d044026_P011	Maize	mitochondrion	70.86	65.84
Zm00001d011483_P004	Maize	mitochondrion	70.71	63.78
VIT_08s0056g00040.t01	Wine grape	cytosol	77.96	57.79
Bra028077.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, plastid	6.07	47.95
Os05t0297001-01	Rice	extracellular	2.29	44.29
Os01t0653350-00	Rice	mitochondrion	5.33	31.44

Protein Annotations

EntrezGene:100777567	MapMan:22.1.4.4	EMBL:ACUP02002108	ncoils:Coil	EnsemblPlantsGene:GLYMA_03G226400	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	UniProt:I1JQZ7	InterPro:IPR001680	InterPro:IPR017986	EnsemblPlants:KRH68370
ProteinID:KRH68370	ProteinID:KRH68370.1	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR45521
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002339EC6	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:42859568..42872150

Molecular Weight (calculated)

145203.0 Da

IEP (calculated)

7.209

GRAVY (calculated)

-0.163

Length

1352 amino acids

Sequence
(BLAST)

0001: MLRLKAFRPT SDKIVKIQLH PTHPWMVTAD DSDRVSVWNW EHRQVVYELK AGGVDERRLV GAKLEKLAEG ETESKGKPTE AIRGGSVKQV NFYDDDVRFW
0101: QLWHNRSAAA EAPTAVHTSA FSSPAPSTKG RHFLVICCLN KAIFLDLVTM RGRDVPKQEL DNKSLLCMEF LYRTGGDGPL VAFGASDGVI RVLSMLTWKL
0201: VRRYTGGHKG SISCLMSFMA ASGEALLVSG ASDGLLIIWS ADHGQDSREL VPKLSLKAHD GGVVAVELSR VMGGAPQLIT IGADKTLAIW DTVSFKELRR
0301: IKPVPKLACH SVASWCHPRA PNLDILTCVK DSHIWAIEHP TYSALTRPLC ELTSVIPPHA LAPNKKLRVY CMVAHTLQPH LVAVGTNIGV IICEFDARSL
0401: PPVAPLPTPS DSREHSAIFV IERELKLLNF QLNNSANPSL GNNSSLSETG RPKGDFFEPL PVKQGKKHIS TPVPHDSYSV LSVSSSGKYL AIVWPDIPYF
0501: SVYKVSDWSI VDSGSARLLA WDACRDRFAI LESALPPRIP IIPKGSSSKR AKEAAAAQAA AAAAAAASTA SVQVRILLDD GTSNILMRSV GARSEPVIGL
0601: HGGALLGVAY RTSRRVSPIA ATAISTIQSM PLSGYGSSGV SSFSTYDDGF SSQRPPTEAA PQNFQLYSWE TFQPVGGLLP QPEWTAWDQT VEYCAFAYQQ
0701: YIVISSLRPQ YRYLGDVAIP YATSAVWHRR QLFVATPTTI EIVFVDAGVA QIDIETKKMK EEQKMKEAQA RAVAEHGELA LITVEGIQSA KEERIALRPP
0801: MLQVVRLASF QHAPSVPPFI SLPKQSRVDS DDSWMATEER KAGEVAVGGG GVSVAVTRFP MEQKRPVGPL VVVGVRDGVL WLIDRYMVAH AVSLSHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAIKSN DLRRALHCLL TMSNSRDIGH DGTQGLGLND ILNLSDKKPN
1001: KVSDKKQDIV EGVQGIVKFA KEFLDLIDAA DATAQSEIAR EALKRLAAAG SVKGALEGHE LRGLALRLAN HGELTRLSSL VNNLVTLGLG REAAFAGAVL
1101: GDNALMEKAW QDTGMLAEAV LHAHAHGRPT LKNLVQIWNQ ALQREVEPTP SQKTDAAAAF LASLEEPKLT SLADAGKKPP IEILPPGMPP LNGPISIQKK
1201: PASAAQNSQQ PPGKPLALEA PPTTTAAQES ATTQQPESTP ASGNDPPPSE STSDTRPAPA TAPPQPESGE STVDNGIPTS TPASDGDPNV NGENVQAAST
1301: GNPAPAPTPT PPDFPVSPAA EVSETTAPSP PTVPTPPAVP TPPAVPTSDP LI

Best Arabidopsis Sequence Match ( AT5G24710.1 )
(BLAST)

0001: MLRARAFRQT NGKIVKIQVH PTHPWLVTAD DSDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG ESDYKAKPTE AIRGGSVKQV KFYDDDVRYW
0101: QLWRNRSAAA ESPSAVNHLT SAFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSGGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTGG HKGSIYCLMN FMASSGEALL VSGGSDGLLV LWSADHGADS RELVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHRKL RVYCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAPLP ALPGSRENSA IYILGRELKL LNFQLSNTAN PSLGNNSALS ESGLSKGDPG EQLTVKQTKK QIVAPVPHDS YSVLSVSSSG KYVAVVWPDI
0501: LYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FAILESVLPH RMPIIPKGGS SRKAKEAAAA AAQAAAAASA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVAATAIST IQSMPLSGFG NSNVSSFSSY DDGFSSQKSA ESAPLNYQLY SWENFEPVGG MLPQPEWTAW DQTVEYCAFA
0701: YQQYMVISSL RPQYRYLGDV AIAHATGAVW HRRQLFVATP TTIECVFVDA GVSEIDIETR KMKEEMKLKE AQARAVAEHG ELALITVEGS QAAKQERISL
0801: RPPMLQVVRL ASFQNAPSVP PFLSLPRQSR GDSDDIMDER RVNEVAVGGG GVSVAVTRFP VEQKRPVGPL VVAGVRDGVL WLIDRYMCAH AISLNHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALHCLL TMSNSKDIGQ DGVGLDLSDI LSLTATKKED
1001: VVEAVEGIVK FAKEFLDLID AADATGHADI AREALKRLAT AGSVKGALQG HELRGLSLRL ANHGELTRLS GLVNNLISIG LGRESAFSAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAHAHGR PTLKNLVQAW NKTLQKEVEK APSSKTDAAS AFLASLEDPK LTSLSDASRK PPIEILPPGM SSIFASITAP KKPLLTQKTA
1201: QPEVAKPLAL EEPTKPLAIE APPSSEAPQT ESAPETAAAA ESPAPETAAV AESPAPGTAA VAEAPASETA AAPVDGPVTE TVSEPPPVEK EETSLEEKSD
1301: PSSTPNTETA TSTENTSQTT TTPESVTTAP PEPITTAPPE TVTTTAVKPT ENAATERRVT NYPPIRSQPI DFDFLNG

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KIH8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.