Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 27224218 endoplasmic reticulum: 28499913 nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH06999 | Soybean | endoplasmic reticulum | 97.67 | 97.42 |
| VIT_14s0171g00280.t01 | Wine grape | cytosol, nucleus, plastid | 86.65 | 85.33 |
| Solyc11g068640.1.1 | Tomato | nucleus | 84.5 | 84.5 |
| AT3G01780.1 | Thale cress | cytosol | 83.38 | 82.31 |
| Bra022067.1-P | Field mustard | nucleus | 82.95 | 80.86 |
| GSMUA_Achr6P17830_001 | Banana | cytosol | 77.26 | 80.09 |
| GSMUA_Achr10P... | Banana | cytosol | 77.0 | 79.75 |
| Zm00001d004785_P001 | Maize | mitochondrion | 52.45 | 79.09 |
| Os11t0175900-01 | Rice | nucleus, plasma membrane | 52.8 | 78.89 |
| HORVU4Hr1G019290.1 | Barley | cytosol | 60.47 | 78.26 |
| EES09396 | Sorghum | cytosol | 72.18 | 72.62 |
| TraesCS4B01G094200.1 | Wheat | unclear | 72.01 | 72.44 |
| TraesCS4D01G091000.1 | Wheat | golgi | 72.01 | 72.44 |
| TraesCS4A01G222200.1 | Wheat | cytosol | 71.66 | 72.16 |
| Os02t0793100-01 | Rice | plasma membrane | 71.32 | 71.75 |
| Zm00001d053028_P001 | Maize | mitochondrion | 66.06 | 66.35 |
| Zm00001d004784_P001 | Maize | cytosol | 18.86 | 57.33 |
| CDX91928 | Canola | cytosol | 1.89 | 46.81 |
Protein Annotations
| EMBL:ACUP02011963 | EnsemblPlants:KRG94459 | EnsemblPlantsGene:GLYMA_19G086600 | EntrezGene:100781324 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0006810 | GO:GO:0006897 | GO:GO:0008150 | InterPro:ARM-type_fold | InterPro:TPLATE | ncoils:Coil |
| PANTHER:PTHR36029 | ProteinID:KRG94459 | ProteinID:KRG94459.1 | SEG:seg | SUPFAM:SSF48371 | UniParc:UPI000233F45E |
| UniProt:K7MXC2 | MapMan:22.1.4.1 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr19:+:30792587..30801774
Molecular Weight (calculated)
128762.0 Da
IEP (calculated)
5.551
GRAVY (calculated)
-0.130
Length
1161 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDILFAQIQA DLRSNDALRQ SGALLQALQQ SAAGRDIAVI AKTAVEEIVA APASAVCKKL AFDLIRSTRL TPDLWDTVCG GIRTDLHFPD PDVAAAAVSI
0101: LAAIPSYRLS KLISDCNKEI SDCFDSPSDS LRFSATETLG CVLARDDLVT LCENNVNLLD RVSAWWARVG SNMLDRSDAV SKVAFESVGR LFQEFSSKRM
0201: SKLAGDKLVD SENSLAIRSN WVSSMVDFVW RKRRALMARS LILPVENFRA TVFPVVYSVK AVASGGVEVI RKLSKASSTS ASNADAEVDS HAEKLVGVSD
0301: VLTHLAPFLV SSLEPALIYE VGINMLYLAD VPGGKPEWAS QSIIAILTLW DRQEFASARE SIVRAVVTNL HLLDLHMQVS LFKRLLLMVK NLRAESDRMY
0401: ALACICRTAL CVHLFAKESV RRGQKPLPGT DIASLFEDAR VNDDLNSITS KSIFREELVA SLVESCFQLS LPLPEQKNTG MESRVIGALA YGTGYGALNW
0501: TEPALEVVEV CRPCVKWDCD GRTYAIDCYL KLLVRLCYIY DTRGGVKRVK DGASQDQILN ETRLQNLQRE LVKDLREVNT PRILARLIWA IAEHIDIEGL
0601: DPLLADDPDD PLNVIISNIH KVLFNIDSTA ETTNRVQDVQ AVLISAQRLG SRHPRAGQLL TKELEEFRNN PLADSVSKHQ CRLILQRIKY ATSHQDSRWA
0701: GVTEARGDYP FSHHKLTVQF YEASAAQDRK LEGLVHKAIL ELWRPDPSEL TLLLTKGVDS TLLKVPPNAI TLTGSSDPCY VEGYHLADSS DGRITLHLKV
0801: LNLTELELNR VDVRVGLSGA LYYMDGSSQA VRQLRGLVSQ DPVLCSVTVG VSHFERCALW VQVLYYPFYG SGAVGDYEGD YAEEDPQIMR QKRSLRPELG
0901: EPVILRCQPY KIPLTELLLP HQISPVEFFR LWPSLPAIVE YTGTYTYEGS GFKATAAQQY GASPFLSGLK SLSSKPFHIV CSHIIRTVAG FEMCYAAKTW
1001: HGGFLGMMIF GASEVSRNVD LGDETTTMLC KFVVRASDPS ITKEIGSDLQ GWLDDLTDGG VEYMPEDEVK VAAAERLRIS MERIALLKAA QPRPKTPKSD
1101: NEDEEEEDDK NKEKKDGEDE KKKGPSTLSK LTAEEAEHQA LQAAVLQEWH MICKDRTTEV N
0101: LAAIPSYRLS KLISDCNKEI SDCFDSPSDS LRFSATETLG CVLARDDLVT LCENNVNLLD RVSAWWARVG SNMLDRSDAV SKVAFESVGR LFQEFSSKRM
0201: SKLAGDKLVD SENSLAIRSN WVSSMVDFVW RKRRALMARS LILPVENFRA TVFPVVYSVK AVASGGVEVI RKLSKASSTS ASNADAEVDS HAEKLVGVSD
0301: VLTHLAPFLV SSLEPALIYE VGINMLYLAD VPGGKPEWAS QSIIAILTLW DRQEFASARE SIVRAVVTNL HLLDLHMQVS LFKRLLLMVK NLRAESDRMY
0401: ALACICRTAL CVHLFAKESV RRGQKPLPGT DIASLFEDAR VNDDLNSITS KSIFREELVA SLVESCFQLS LPLPEQKNTG MESRVIGALA YGTGYGALNW
0501: TEPALEVVEV CRPCVKWDCD GRTYAIDCYL KLLVRLCYIY DTRGGVKRVK DGASQDQILN ETRLQNLQRE LVKDLREVNT PRILARLIWA IAEHIDIEGL
0601: DPLLADDPDD PLNVIISNIH KVLFNIDSTA ETTNRVQDVQ AVLISAQRLG SRHPRAGQLL TKELEEFRNN PLADSVSKHQ CRLILQRIKY ATSHQDSRWA
0701: GVTEARGDYP FSHHKLTVQF YEASAAQDRK LEGLVHKAIL ELWRPDPSEL TLLLTKGVDS TLLKVPPNAI TLTGSSDPCY VEGYHLADSS DGRITLHLKV
0801: LNLTELELNR VDVRVGLSGA LYYMDGSSQA VRQLRGLVSQ DPVLCSVTVG VSHFERCALW VQVLYYPFYG SGAVGDYEGD YAEEDPQIMR QKRSLRPELG
0901: EPVILRCQPY KIPLTELLLP HQISPVEFFR LWPSLPAIVE YTGTYTYEGS GFKATAAQQY GASPFLSGLK SLSSKPFHIV CSHIIRTVAG FEMCYAAKTW
1001: HGGFLGMMIF GASEVSRNVD LGDETTTMLC KFVVRASDPS ITKEIGSDLQ GWLDDLTDGG VEYMPEDEVK VAAAERLRIS MERIALLKAA QPRPKTPKSD
1101: NEDEEEEDDK NKEKKDGEDE KKKGPSTLSK LTAEEAEHQA LQAAVLQEWH MICKDRTTEV N
0001: MDILFAQIQA DLRSNDALRQ SSALLQALQQ SAAGRDISVI AKSAVEEIVA SPASAVCKKL AFDLIRSTRL TPDLWDTVCS GVKTDLHFPD PDVTAAAVSI
0101: LAALPAFSLP KLISDCSSEI ASCFDSPSDN LRFSITETLG CILARDDLVT LCENNVGLLD KVSNWWARIG QNMLDKSDAV SKVAFESVGR LFQEFDSKRM
0201: SRLAGDKLVD SENSLAIRSK WVSSMVDIVW RKRSALMARS LVLPVETFRA TVFPLVFAVK AVASGSVEVI RQLSKASSAA AAANATVVDS NAEKLVGVSD
0301: LVTHLAPFLA SSLDPALIFE VGINMLYLAD VAGGKPEWAS QSIIAILTLW DRQEFSSARE SIVRAVVTNL HLLDLHMQVS LFRRLLLMVR NLRAESDRMH
0401: ALACICRTAL CVHLFARESA RRGQKPLPGT DIISLFEDAR IKDDLNSVTS KSLFREELVA MLVESCFQLS LPLPEQKNSG MESRVIGALA YGTGYGALNW
0501: TEPALEVVEV CRPCVKWDCD GRTYAVDCYL KLLVRLCHIY DTRGGVKRLK DGASQDQILN ETRLQNLQRE LVKDLQEVNT PRILGRLIWT IAEHIDLEGL
0601: DPLLADDPDD PLNIIIANIH KVLFNLDAAA TTSNRLQDVQ AVLLCAQRMG SRHARAGQLL TKELEEYRNH AAADTVSKHQ TRLILQRIKY VSNLPERKWA
0701: GVSETRGDYP FSHHKLTVQF YEPSAAQDRK LEGLIHKAIL ELWRPKPTEL TLFLTKGVDS TSIKVPPTAY PLTGSSDPCY IEAYHLADTN DGRVTLHLKI
0801: INLTELELNR VDIRVGLSGA LYFMDGSPQA VRQLRNLVSQ DPVQCSVTVG VSQFERCGFW VQVLYYPFRG ARGEYDGDYI EEDPQIMKQK RGSKAELGEP
0901: VILRCQPYKI PLTELLLPHK ISPVEFFRLW PSLPAVAEYT GTYMYEGSGF MATAAQQYGA SPFLSGLKSL SSKPFHRVCS HIIRTVAGFQ LCYAAKTWHG
1001: GFVGMMIFGA SEVSRNMDLG DETTTMMCKF VVRASEASIT KQIESDIQGW CDDLTDGGVE YMPEDEVKAT AAEKLKISME RIALLKAAQP KKTSKIEEES
1101: ENEEEEEGEE EDDDEEVKEK KEKEEGKDKE EKKKKEKEKG TFSKLTAEET EHMALQAAVL QEWHILCKDR KYTKVN
0101: LAALPAFSLP KLISDCSSEI ASCFDSPSDN LRFSITETLG CILARDDLVT LCENNVGLLD KVSNWWARIG QNMLDKSDAV SKVAFESVGR LFQEFDSKRM
0201: SRLAGDKLVD SENSLAIRSK WVSSMVDIVW RKRSALMARS LVLPVETFRA TVFPLVFAVK AVASGSVEVI RQLSKASSAA AAANATVVDS NAEKLVGVSD
0301: LVTHLAPFLA SSLDPALIFE VGINMLYLAD VAGGKPEWAS QSIIAILTLW DRQEFSSARE SIVRAVVTNL HLLDLHMQVS LFRRLLLMVR NLRAESDRMH
0401: ALACICRTAL CVHLFARESA RRGQKPLPGT DIISLFEDAR IKDDLNSVTS KSLFREELVA MLVESCFQLS LPLPEQKNSG MESRVIGALA YGTGYGALNW
0501: TEPALEVVEV CRPCVKWDCD GRTYAVDCYL KLLVRLCHIY DTRGGVKRLK DGASQDQILN ETRLQNLQRE LVKDLQEVNT PRILGRLIWT IAEHIDLEGL
0601: DPLLADDPDD PLNIIIANIH KVLFNLDAAA TTSNRLQDVQ AVLLCAQRMG SRHARAGQLL TKELEEYRNH AAADTVSKHQ TRLILQRIKY VSNLPERKWA
0701: GVSETRGDYP FSHHKLTVQF YEPSAAQDRK LEGLIHKAIL ELWRPKPTEL TLFLTKGVDS TSIKVPPTAY PLTGSSDPCY IEAYHLADTN DGRVTLHLKI
0801: INLTELELNR VDIRVGLSGA LYFMDGSPQA VRQLRNLVSQ DPVQCSVTVG VSQFERCGFW VQVLYYPFRG ARGEYDGDYI EEDPQIMKQK RGSKAELGEP
0901: VILRCQPYKI PLTELLLPHK ISPVEFFRLW PSLPAVAEYT GTYMYEGSGF MATAAQQYGA SPFLSGLKSL SSKPFHRVCS HIIRTVAGFQ LCYAAKTWHG
1001: GFVGMMIFGA SEVSRNMDLG DETTTMMCKF VVRASEASIT KQIESDIQGW CDDLTDGGVE YMPEDEVKAT AAEKLKISME RIALLKAAQP KKTSKIEEES
1101: ENEEEEEGEE EDDDEEVKEK KEKEEGKDKE EKKKKEKEKG TFSKLTAEET EHMALQAAVL QEWHILCKDR KYTKVN
Arabidopsis Description
TPLATEProtein TPLATE [Source:UniProtKB/Swiss-Prot;Acc:F4J8D3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.