CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
mitochondrion 5
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90331
KRG94459
KRH02873
KRH04644
KRH06999
KRH09738
KRH12557
KRH28498
KRH37507
KRH41754
KRH44443
KRH47463
KRH51589
KRH57890
KRH60454
KRH60909
KRH76964

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24710.1	KRH41754	AT1G04810.1	24529374
AT5G24710.1	KRH60454	AT1G04810.1	24529374
AT5G24710.1	KRH09738	AT1G15370.1	24529374
AT5G24710.1	KRH44443	AT1G15370.1	24529374
AT5G24710.1	KRH47463	AT1G15370.1	24529374
AT5G24710.1	KRH51589	AT1G20760.1	24529374
AT5G24710.1	KRH60909	AT1G20760.1	24529374
AT5G24710.1	KRH12557	AT2G05830.1	24529374
AT5G24710.1	KRH37507	AT2G05830.1	24529374
AT5G24710.1	KRG94459	AT3G01780.1	24529374
AT5G24710.1	KRH06999	AT3G01780.1	24529374
AT5G24710.1	KRH04644	AT3G50590.1	24529374
AT5G24710.1	KRH28498	AT3G50590.1	24529374
AT5G24710.1	KRH57890	AT3G50590.1	24529374
AT5G24710.1	KRH76964	AT3G50590.1	24529374
AT5G24710.1	KRG90331	AT5G57460.1	24529374
AT5G24710.1	KRH02873	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89827	Soybean	cytosol	29.03	95.35
KRG99486	Soybean	endoplasmic reticulum	25.93	94.21
KRH68370	Soybean	endoplasmic reticulum	97.35	81.36
HORVU1Hr1G042290.1	Barley	mitochondrion	5.31	76.92
CDY19826	Canola	mitochondrion	80.71	73.61
GSMUA_Achr1P28020_001	Banana	mitochondrion	77.08	69.57
GSMUA_Achr6P21400_001	Banana	mitochondrion	80.35	68.68
AT5G24710.1	Thale cress	mitochondrion	82.83	67.97
CDX87116	Canola	mitochondrion	80.62	66.25
TraesCS3B01G263200.1	Wheat	golgi, unclear	78.76	65.44
TraesCS3A01G236500.2	Wheat	mitochondrion	78.5	65.41
Os01t0653800-02	Rice	plasma membrane	78.94	64.78
PGSC0003DMT400046936	Potato	mitochondrion	80.89	64.78
KXG33009	Sorghum	mitochondrion	78.41	64.2
Solyc01g102510.2.1	Tomato	nucleus	80.8	63.67
TraesCS3D01G237000.1	Wheat	mitochondrion	78.58	63.66
Zm00001d044026_P011	Maize	mitochondrion	77.88	60.48
Zm00001d011483_P004	Maize	mitochondrion	77.52	58.44
VIT_08s0056g00040.t01	Wine grape	cytosol	85.93	53.23
Os05t0297001-01	Rice	extracellular	2.83	45.71
Bra028077.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, plastid	6.9	45.61
Os01t0653350-00	Rice	mitochondrion	6.28	31.0

Protein Annotations

MapMan:22.1.4.4	EMBL:ACUP02012162	EnsemblPlantsGene:GLYMA_19G223400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR017986	UniProt:K7MZP4	EnsemblPlants:KRG96637	ProteinID:KRG96637	ProteinID:KRG96637.1
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR45521	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI00029610AD	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr19:+:47569792..47583051

Molecular Weight (calculated)

123081.0 Da

IEP (calculated)

8.223

GRAVY (calculated)

-0.053

Length

1130 amino acids

Sequence
(BLAST)

0001: MLRLKAFRPT SDKIVKIQLH PTHPWMVTAD DSDRVSVWNW EHRQVVYELK AGGVDERRLV GAKLEKLAEG ETESKGKPTE AIRGGSVKQV NFYDDDVRFW
0101: QLWHNRSVAA EAPTAVHTSA FSSLAPSTKG RHFLVICCLN KAIFLDLVTM RGRDVPKQEL DNKSLLCMEF LYRTGGDGPL VAFGASDGVI RVLSMMTWKL
0201: VRRYTGGHKG SISCLMSFMA ASGEALLVSG ASDGLLIIWS ADHGQDSREL VPKLSLKAHD GGVVAVELSR VMGGAPQLIT IGADKTLAIW DTVSFKELRR
0301: IKPVPKLACH SVASWCHPRA PNLDILTCVK DSHIWAIEHP TYSALTRPLC ELTSVIPPQA LAPNKKLRVY CMVAHTLQPH LVAVGTNIGV IICEFDARSL
0401: PPVAPLPTPS DSREHSAIFV IERELKLLNF QLNNSANPSL GNNSSLSETG RPKGDFFEPL PVKQGKKHIS TPVPHDSHSV LSVSSSGKYL AIVWPDIPYF
0501: SVYKVSDWSI VDSGSARLLA WDTCRDRFAI LESALPPRIP IVPKGSSSKR AKEAAAAQAA AAAAAAASTA SVQVRILLDD GTSNILMRSV GTRSEPVIGL
0601: HGGALLGVAY RTSRRVSPIA ATAISTIQSM PLSGYGSSGV SSFTTYDDGF SSQRPPTEAA PQNFQLYSWE TFQPVGGLLP QPEWTAWDQT VEYCAFAYQQ
0701: YIIISSLRPQ YRYLGDVAIP YATSAVWHRR QLFVATPTTI EIVFVDAGVA QIDIATKKMK EEQKMKEAQA RAVAEHGELA LITVEGIQSA KEERIALRPP
0801: MLQVVRLASF QHAPSVPPFL SLPKQSRVDS DDSWMATEER KAGEVAVGGG GVSVAVTRFP MEQKRPVGPL VVVGVRDGVL WLIDRYMCAH ALSLSHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMKSN DLKRALHCLL TMSNSRDIGH DGTQGLGLND ILSLSDKKPD
1001: KVSDKKQDIV EGVQGIVKFA KEFLDLIDAA DATAQSEIAR EALKRLAAAG SVKGALEGHE LRGLALRLAN HGELTRLSGL VNNLVMLGLG REAAFAGAVL
1101: GDNALMEKAW QDTGMLAELC FMLMHMDVQL

Best Arabidopsis Sequence Match ( AT5G24710.1 )
(BLAST)

0001: MLRARAFRQT NGKIVKIQVH PTHPWLVTAD DSDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG ESDYKAKPTE AIRGGSVKQV KFYDDDVRYW
0101: QLWRNRSAAA ESPSAVNHLT SAFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSGGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTGG HKGSIYCLMN FMASSGEALL VSGGSDGLLV LWSADHGADS RELVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHRKL RVYCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAPLP ALPGSRENSA IYILGRELKL LNFQLSNTAN PSLGNNSALS ESGLSKGDPG EQLTVKQTKK QIVAPVPHDS YSVLSVSSSG KYVAVVWPDI
0501: LYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FAILESVLPH RMPIIPKGGS SRKAKEAAAA AAQAAAAASA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVAATAIST IQSMPLSGFG NSNVSSFSSY DDGFSSQKSA ESAPLNYQLY SWENFEPVGG MLPQPEWTAW DQTVEYCAFA
0701: YQQYMVISSL RPQYRYLGDV AIAHATGAVW HRRQLFVATP TTIECVFVDA GVSEIDIETR KMKEEMKLKE AQARAVAEHG ELALITVEGS QAAKQERISL
0801: RPPMLQVVRL ASFQNAPSVP PFLSLPRQSR GDSDDIMDER RVNEVAVGGG GVSVAVTRFP VEQKRPVGPL VVAGVRDGVL WLIDRYMCAH AISLNHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALHCLL TMSNSKDIGQ DGVGLDLSDI LSLTATKKED
1001: VVEAVEGIVK FAKEFLDLID AADATGHADI AREALKRLAT AGSVKGALQG HELRGLSLRL ANHGELTRLS GLVNNLISIG LGRESAFSAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAHAHGR PTLKNLVQAW NKTLQKEVEK APSSKTDAAS AFLASLEDPK LTSLSDASRK PPIEILPPGM SSIFASITAP KKPLLTQKTA
1201: QPEVAKPLAL EEPTKPLAIE APPSSEAPQT ESAPETAAAA ESPAPETAAV AESPAPGTAA VAEAPASETA AAPVDGPVTE TVSEPPPVEK EETSLEEKSD
1301: PSSTPNTETA TSTENTSQTT TTPESVTTAP PEPITTAPPE TVTTTAVKPT ENAATERRVT NYPPIRSQPI DFDFLNG

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KIH8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.