CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77930
CDX87673
CDX88623
CDX96625
CDY01356
CDY04295
CDY09484
CDY11868
CDY17791
CDY25907
CDY29508
CDY31869
CDY33397
CDY33644
CDY36552
CDY37153
CDY38299
CDY39638
CDY55980
CDY66337
CDY70356
CDY71251

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24710.1	CDY36552	AT1G15370.1	24529374
AT5G24710.1	CDY39638	AT1G15370.1	24529374
AT5G24710.1	CDY55980	AT1G15370.1	24529374
AT5G24710.1	CDY71251	AT1G15370.1	24529374
AT5G24710.1	CDX96625	AT1G20760.1	24529374
AT5G24710.1	CDY01356	AT1G20760.1	24529374
AT5G24710.1	CDY29508	AT1G20760.1	24529374
AT5G24710.1	CDY31869	AT1G20760.1	24529374
AT5G24710.1	CDY33644	AT1G20760.1	24529374
AT5G24710.1	CDY66337	AT1G20760.1	24529374
AT5G24710.1	CDY04295	AT2G05830.1	24529374
AT5G24710.1	CDY09484	AT2G05830.1	24529374
AT5G24710.1	CDY33397	AT2G05830.1	24529374
AT5G24710.1	CDY70356	AT2G05830.1	24529374
AT5G24710.1	CDX87673	AT3G01780.1	24529374
AT5G24710.1	CDY37153	AT3G01780.1	24529374
AT5G24710.1	CDX77930	AT3G50590.1	24529374
AT5G24710.1	CDY17791	AT3G50590.1	24529374
AT5G24710.1	CDX88623	AT5G57460.1	24529374
AT5G24710.1	CDY11868	AT5G57460.1	24529374
AT5G24710.1	CDY25907	AT5G57460.1	24529374
AT5G24710.1	CDY38299	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87116	Canola	mitochondrion	97.74	88.07
Bra036523.1-P	Field mustard	mitochondrion	99.03	87.46
AT5G24710.1	Thale cress	mitochondrion	93.38	84.02
KRG96637	Soybean	endoplasmic reticulum	73.61	80.71
KRG89827	Soybean	cytosol	20.1	72.38
KRG99486	Soybean	endoplasmic reticulum	17.92	71.38
KRH68370	Soybean	endoplasmic reticulum	77.64	71.15
GSMUA_Achr1P28020_001	Banana	mitochondrion	71.75	71.01
HORVU1Hr1G042290.1	Barley	mitochondrion	4.44	70.51
GSMUA_Achr6P21400_001	Banana	mitochondrion	75.22	70.5
VIT_05s0094g01650.t01	Wine grape	cytosol	4.04	69.44
TraesCS3A01G236500.2	Wheat	mitochondrion	73.53	67.18
TraesCS3B01G263200.1	Wheat	golgi, unclear	73.53	66.99
Os01t0653800-02	Rice	plasma membrane	74.41	66.96
KXG33009	Sorghum	mitochondrion	74.5	66.88
PGSC0003DMT400046936	Potato	mitochondrion	76.03	66.76
Solyc01g102510.2.1	Tomato	nucleus	75.71	65.41
TraesCS3D01G237000.1	Wheat	mitochondrion	73.61	65.38
Zm00001d044026_P011	Maize	mitochondrion	74.17	63.16
HORVU3Hr1G058910.1	Barley	plastid	73.61	62.42
Zm00001d011483_P004	Maize	mitochondrion	73.77	60.97
VIT_08s0056g00040.t01	Wine grape	cytosol	78.77	53.51
Os05t0297001-01	Rice	extracellular	2.58	45.71
Os01t0653350-00	Rice	mitochondrion	5.97	32.31

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.1.4.4	UniProt:A0A078G3A2	EnsemblPlants:CDY19826	ProteinID:CDY19826	ProteinID:CDY19826.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00009587001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR45521
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE22BD	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaA09g04790DBnaA09g04790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G3A2]

Coordinates

chrLK032100:+:555528..562863

Molecular Weight (calculated)

134142.0 Da

IEP (calculated)

7.165

GRAVY (calculated)

-0.154

Length

1239 amino acids

Sequence
(BLAST)

0001: MLRARAFRQT NNKIVKIQVH PTHPWLVTAD DTDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG DSDYKGKPTE AIRGGSVKQV KFYDDDVRYW
0101: QLWRNRSAAA ESPSAVDHLT SGFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKS ELDNRSLVCM EFLTRSSAGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTAG HKGSIYCLMN FMASSGEALL VSGGSDGLLI LWNADHGTDS RDLVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHKKL RVFCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAFLP ALSGSRDNSA VYILGRELKL LNFQISNTAN PSLGNNALSE SGMSKLDAGE QLTVKQTKKK GVATVPHDSY SVLSVSSSGK YVAVVWPDIL
0501: YFSIYKVSDW SIVDSGSARI LAWDTCRDRF AILESVLPQR MPMIPKGGSS RKAKEAAAAA AQAAAAAANA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVSATAIST IQSMPLSGFG NSNVSSFSSY DDGSSQRSTE SAPLNYQLYS WENFEPVGGM LPQPEWTAWD KTVEYCAFAY
0701: QQYMVISSLR PQYRYLGNVA ISHATGAVWH RRQLFVATQT TIECVFVDAG VTEIDIETRK MKEEMKLKEA QARAVAEHGE LALITVEGAQ SSKQEKISLR
0801: APLLQVVRLA SFQNAPSVPP FLSLPRQSRG DGDDMDERRA SEVAVGGGGV SVAVTRFPVE QKRPVGPLVV AGVRDGVLWL IDRYMCAHAI SLNHPGIRCR
0901: CLAAYGDAIS AVKWASRLGR EHHDDLAQFM LGMGYATEAL HLPGISKRLE FDLAMQSNDL KRALHCLLTM SNSRDIGQDG LGLDLSDILS LTAEKKEDVV
1001: EAVEGIVKFA KEFLDLIDAA DATGNADVAR EALKRLATAG SVKGALQGHE LRGLSLRLAN HGELTRLSGL INNLISIGLG RESAFSAAVL GDNALMEKAW
1101: QDTGMLAEAV LHAHAHGRPS LKNLVQAWNK TLQKEVEQVS STKTDAASAF LASLEDPKLT TAPETASAAE SAAPETAAGP VTETVSEPSA PEKEETSSED
1201: KSDPSSAPKT ETANAATERP QVTYPPIRSQ PIDFDFLND

Best Arabidopsis Sequence Match ( AT5G24710.1 )
(BLAST)

0001: MLRARAFRQT NGKIVKIQVH PTHPWLVTAD DSDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG ESDYKAKPTE AIRGGSVKQV KFYDDDVRYW
0101: QLWRNRSAAA ESPSAVNHLT SAFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSGGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTGG HKGSIYCLMN FMASSGEALL VSGGSDGLLV LWSADHGADS RELVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHRKL RVYCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAPLP ALPGSRENSA IYILGRELKL LNFQLSNTAN PSLGNNSALS ESGLSKGDPG EQLTVKQTKK QIVAPVPHDS YSVLSVSSSG KYVAVVWPDI
0501: LYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FAILESVLPH RMPIIPKGGS SRKAKEAAAA AAQAAAAASA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVAATAIST IQSMPLSGFG NSNVSSFSSY DDGFSSQKSA ESAPLNYQLY SWENFEPVGG MLPQPEWTAW DQTVEYCAFA
0701: YQQYMVISSL RPQYRYLGDV AIAHATGAVW HRRQLFVATP TTIECVFVDA GVSEIDIETR KMKEEMKLKE AQARAVAEHG ELALITVEGS QAAKQERISL
0801: RPPMLQVVRL ASFQNAPSVP PFLSLPRQSR GDSDDIMDER RVNEVAVGGG GVSVAVTRFP VEQKRPVGPL VVAGVRDGVL WLIDRYMCAH AISLNHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALHCLL TMSNSKDIGQ DGVGLDLSDI LSLTATKKED
1001: VVEAVEGIVK FAKEFLDLID AADATGHADI AREALKRLAT AGSVKGALQG HELRGLSLRL ANHGELTRLS GLVNNLISIG LGRESAFSAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAHAHGR PTLKNLVQAW NKTLQKEVEK APSSKTDAAS AFLASLEDPK LTSLSDASRK PPIEILPPGM SSIFASITAP KKPLLTQKTA
1201: QPEVAKPLAL EEPTKPLAIE APPSSEAPQT ESAPETAAAA ESPAPETAAV AESPAPGTAA VAEAPASETA AAPVDGPVTE TVSEPPPVEK EETSLEEKSD
1301: PSSTPNTETA TSTENTSQTT TTPESVTTAP PEPITTAPPE TVTTTAVKPT ENAATERRVT NYPPIRSQPI DFDFLNG

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KIH8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.