Factsheet for TraesCS3A01G236500.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G348400.1
TraesCS1B01G363000.1
TraesCS1D01G351400.1
TraesCS2A01G014200.1
TraesCS2A01G430100.2
TraesCS2B01G003600.1
TraesCS2B01G450800.2
TraesCS2D01G014900.1
TraesCS2D01G427700.2
TraesCS4A01G204000.2
TraesCS4A01G222200.1
TraesCS4A01G319600.1
TraesCS4A01G485300.1
TraesCS4B01G094200.1
TraesCS4B01G107800.1
TraesCS4B01G324500.1
TraesCS4D01G091000.1
TraesCS4D01G104900.1
TraesCS4D01G321600.1
TraesCS5A01G497000.1
TraesCS5B01G559500.1
TraesCS5D01G565700.1
TraesCS7A01G009900.1
TraesCS7A01G553100.1
TraesCS7B01G476800.3
TraesCS7D01G009600.1
TraesCS7D01G539600.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24710.1	TraesCS1A01G348400.1	AT1G04810.1	24529374
AT5G24710.1	TraesCS1B01G363000.1	AT1G04810.1	24529374
AT5G24710.1	TraesCS1D01G351400.1	AT1G04810.1	24529374
AT5G24710.1	TraesCS2A01G430100.2	AT1G04810.1	24529374
AT5G24710.1	TraesCS2B01G450800.2	AT1G04810.1	24529374
AT5G24710.1	TraesCS2D01G427700.2	AT1G04810.1	24529374
AT5G24710.1	TraesCS4A01G319600.1	AT1G15370.1	24529374
AT5G24710.1	TraesCS5B01G559500.1	AT1G15370.1	24529374
AT5G24710.1	TraesCS5D01G565700.1	AT1G15370.1	24529374
AT5G24710.1	TraesCS4B01G324500.1	AT1G20760.1	24529374
AT5G24710.1	TraesCS4D01G321600.1	AT1G20760.1	24529374
AT5G24710.1	TraesCS5A01G497000.1	AT1G20760.1	24529374
AT5G24710.1	TraesCS7A01G553100.1	AT1G20760.1	24529374
AT5G24710.1	TraesCS7B01G476800.3	AT1G20760.1	24529374
AT5G24710.1	TraesCS7D01G539600.2	AT1G20760.1	24529374
AT5G24710.1	TraesCS4A01G204000.2	AT2G05830.1	24529374
AT5G24710.1	TraesCS4B01G107800.1	AT2G05830.1	24529374
AT5G24710.1	TraesCS4D01G104900.1	AT2G05830.1	24529374
AT5G24710.1	TraesCS4A01G222200.1	AT3G01780.1	24529374
AT5G24710.1	TraesCS4B01G094200.1	AT3G01780.1	24529374
AT5G24710.1	TraesCS4D01G091000.1	AT3G01780.1	24529374
AT5G24710.1	TraesCS4A01G485300.1	AT3G50590.1	24529374
AT5G24710.1	TraesCS7A01G009900.1	AT3G50590.1	24529374
AT5G24710.1	TraesCS7D01G009600.1	AT3G50590.1	24529374
AT5G24710.1	TraesCS2A01G014200.1	AT5G57460.1	24529374
AT5G24710.1	TraesCS2B01G003600.1	AT5G57460.1	24529374
AT5G24710.1	TraesCS2D01G014900.1	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G263200.1	Wheat	golgi, unclear	98.3	98.01
TraesCS3D01G237000.1	Wheat	mitochondrion	97.35	94.62
Os01t0653800-02	Rice	plasma membrane	90.34	88.96
HORVU3Hr1G058910.1	Barley	plastid	94.4	87.61
KXG33009	Sorghum	mitochondrion	89.01	87.46
Zm00001d044026_P011	Maize	mitochondrion	87.61	81.65
GSMUA_Achr1P28020_001	Banana	mitochondrion	73.16	79.23
Zm00001d011483_P004	Maize	mitochondrion	86.8	78.52
KRG96637	Soybean	endoplasmic reticulum	65.41	78.5
GSMUA_Achr6P21400_001	Banana	mitochondrion	75.44	77.38
CDY19826	Canola	mitochondrion	67.18	73.53
KRG89827	Soybean	cytosol	18.29	72.09
KRH68370	Soybean	endoplasmic reticulum	71.31	71.52
KRG99486	Soybean	endoplasmic reticulum	16.37	71.38
AT5G24710.1	Thale cress	mitochondrion	70.35	69.28
CDX87116	Canola	mitochondrion	69.03	68.07
VIT_05s0094g01650.t01	Wine grape	cytosol	3.61	68.06
PGSC0003DMT400046936	Potato	mitochondrion	70.8	68.04
Solyc01g102510.2.1	Tomato	nucleus	70.35	66.53
Bra028077.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, plastid	5.68	45.03

Protein Annotations

EnsemblPlants:TraesCS3A01G236500.2	EnsemblPlantsGene:TraesCS3A01G236500	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	ncoils:Coil	PANTHER:PTHR45521	PFscan:PS50082	PFscan:PS50294
ScanProsite:PS00678	SEG:seg	SMART:SM00320	SUPFAM:SSF50978	MapMan:22.1.4.4	:

Description

No Description!

Coordinates

chr3A:-:441850647..441866109

Molecular Weight (calculated)

144884.0 Da

IEP (calculated)

7.210

GRAVY (calculated)

-0.106

Length

1356 amino acids

Sequence
(BLAST)

0001: MLRLRAFRPT SDKVVKIQLH PTHPWLVTAD ANDRVSVWDW EHRQVIYELK AGGVDERRLV GVKLEKLAEG ETDSKGKPTE AIRGGSVKQV SFYDDDVRFW
0101: QHWRNCSAAS EAPTAVNQQS SAFSAPAPST RGRHFVVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSSSD APLVAFGASD GVIRVLSMMT
0201: WKLVRRYTGG HKGAISCLMT FMSAAGEVHL VSGGSDGLLV LWSADHIHDS RELVPKISLK AHDGGVVAVE LSRVMGSAPQ LITIGADKTL AIWDTVTFKE
0301: IRRIKPVPKL ACHSVASWCH PRVPNLDILT CVKDSHIWAI EHPTYSALTR PLCELSSLVP PQALAQHKKL RVYCMVAHPL QPHLVATGTN IGIILSEFDP
0401: RALPAVAPLP ALTESKEHSA VYIVERELKL LNFQLSNTAN PSLGSASEAG RSRSESIDQL IVKQSKKHIS TPAPHDSYSI LSASSSGKYV AVVWPDIPSF
0501: VVYKASDWSV VDSGTGKLFA WDSCRDRYAL VESALAPRMP LIVKGGSSKK AKEAAAAAAQ AAAAAASAAS SATVQVRILL DDGTAHVLQR SIDGRSEPVV
0601: GLHGGALLGV TYRTSRRISP LTATAISTVQ SMPLSGFGGS GSSFASDDPF SSREGPPQNF QLYSWETYQP VSGLLAQPEW TVWDQTVEYC AFAYQQYIVI
0701: SSLRPQFRYL GDVSIPSATG AVWHRRQLFV ATPTTIECVF VDAGVAAIDI ETKKRKEEMK AREAQGRAVA DHGDLALITV EGPQVTASEK ISLRPPMLQV
0801: VRLASFQHAP SIPPFIVPKQ SKLNGDDSVF LKELDDRRYS EVAVAGGGVS VAVTRFPPEQ KRPIGPLVLV GVRDGVLWLV DRYMCAHALS LSHPGIRCRC
0901: LAAYGDPVSA VKWATRLGRE HHDDLAQFML GMGYATEALH LPGISKRLEF DLAMQSKDLK RALACLLTMS NSRDVGQETT ATDVTQILNL AVAKQAKQES
1001: LADAVQGIVK FVKEFFDLID AADATGQAEI AREVLKRLAA AASVKGALHG QTLRGLALRL ANHGELTRLS GLVANLITAG HGCEAAFAAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAQAHGR PSLRSSVITW NKMLQKELDH MPTVKTDAAA AFLASLEDPK LTSLGETEKK PPIEILPPGM PPLSAPPIII KKAAAKPGLP
1201: NAAQTPGAPM NQGTPMAQGT PMNQSTPMAQ GTPVAQGAPM AQAPPALAQS TDEVKPLEAT TAPDNVEATA ATSNAEATAA PGTAEATEAP VPDPTSSSPD
1301: AAAAPAPAAD SSGTDALAVT PSDSTNDAPS TKEPETQDKP PSTEASPSPP PSISAV

Best Arabidopsis Sequence Match ( AT5G24710.1 )
(BLAST)

0001: MLRARAFRQT NGKIVKIQVH PTHPWLVTAD DSDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG ESDYKAKPTE AIRGGSVKQV KFYDDDVRYW
0101: QLWRNRSAAA ESPSAVNHLT SAFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSGGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTGG HKGSIYCLMN FMASSGEALL VSGGSDGLLV LWSADHGADS RELVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHRKL RVYCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAPLP ALPGSRENSA IYILGRELKL LNFQLSNTAN PSLGNNSALS ESGLSKGDPG EQLTVKQTKK QIVAPVPHDS YSVLSVSSSG KYVAVVWPDI
0501: LYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FAILESVLPH RMPIIPKGGS SRKAKEAAAA AAQAAAAASA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVAATAIST IQSMPLSGFG NSNVSSFSSY DDGFSSQKSA ESAPLNYQLY SWENFEPVGG MLPQPEWTAW DQTVEYCAFA
0701: YQQYMVISSL RPQYRYLGDV AIAHATGAVW HRRQLFVATP TTIECVFVDA GVSEIDIETR KMKEEMKLKE AQARAVAEHG ELALITVEGS QAAKQERISL
0801: RPPMLQVVRL ASFQNAPSVP PFLSLPRQSR GDSDDIMDER RVNEVAVGGG GVSVAVTRFP VEQKRPVGPL VVAGVRDGVL WLIDRYMCAH AISLNHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALHCLL TMSNSKDIGQ DGVGLDLSDI LSLTATKKED
1001: VVEAVEGIVK FAKEFLDLID AADATGHADI AREALKRLAT AGSVKGALQG HELRGLSLRL ANHGELTRLS GLVNNLISIG LGRESAFSAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAHAHGR PTLKNLVQAW NKTLQKEVEK APSSKTDAAS AFLASLEDPK LTSLSDASRK PPIEILPPGM SSIFASITAP KKPLLTQKTA
1201: QPEVAKPLAL EEPTKPLAIE APPSSEAPQT ESAPETAAAA ESPAPETAAV AESPAPGTAA VAEAPASETA AAPVDGPVTE TVSEPPPVEK EETSLEEKSD
1301: PSSTPNTETA TSTENTSQTT TTPESVTTAP PEPITTAPPE TVTTTAVKPT ENAATERRVT NYPPIRSQPI DFDFLNG

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KIH8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.