Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G009900.1 | Wheat | cytosol | 97.43 | 99.0 |
| HORVU5Hr1G067090.1 | Barley | cytosol | 98.53 | 95.38 |
| KXG38043 | Sorghum | cytosol | 89.84 | 88.65 |
| Os09t0407950-01 | Rice | plasma membrane | 53.61 | 88.22 |
| Zm00001d033368_P007 | Maize | cytosol | 87.03 | 85.87 |
| Os09t0408000-01 | Rice | cytosol, nucleus | 25.21 | 84.77 |
| VIT_00s1373g00010.t01 | Wine grape | cytosol | 7.53 | 78.85 |
| KRH28498 | Soybean | cytosol | 9.73 | 74.65 |
| GSMUA_Achr10P... | Banana | cytosol | 71.73 | 74.32 |
| Solyc02g090570.2.1 | Tomato | nucleus | 67.07 | 67.65 |
| KRH04644 | Soybean | endoplasmic reticulum | 65.97 | 66.46 |
| Bra036092.1-P | Field mustard | cytosol | 63.28 | 66.45 |
| KRH57890 | Soybean | endoplasmic reticulum | 65.85 | 66.34 |
| AT3G50590.1 | Thale cress | cytosol | 64.69 | 65.49 |
| CDX77930 | Canola | cytosol | 65.12 | 65.24 |
| KRH76964 | Soybean | nucleus | 64.63 | 65.1 |
| CDY17791 | Canola | cytosol | 65.06 | 64.86 |
| VIT_00s0961g00020.t01 | Wine grape | cytosol, extracellular, plastid | 7.04 | 47.13 |
| VIT_00s0783g00010.t01 | Wine grape | cytosol | 15.36 | 44.27 |
| CDY26515 | Canola | cytosol, nucleus, plastid | 6.3 | 40.71 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G485300.1 | EnsemblPlantsGene:TraesCS4A01G485300 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | ncoils:Coil | PANTHER:PTHR19878 | PANTHER:PTHR19878:SF4 | PFscan:PS50082 | PFscan:PS50294 |
| SEG:seg | SMART:SM00320 | SUPFAM:SSF50978 | MapMan:22.1.4.4 | : | : |
Description
No Description!
Coordinates
chr4A:+:739027495..739038859
Molecular Weight (calculated)
177396.0 Da
IEP (calculated)
8.478
GRAVY (calculated)
-0.176
Length
1634 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGWEWETVQH LDLRHAGGRR GAGAPARPLQ PHAAAFRASQ AIVAVAVGTH VVEFDALTGS KIALVDLGAR VVRMAYSPTS SHVIIAILED ATIRSCDFAT
0101: EQTLVLHSPE KKTDHVSIDT EVHLALTPLE PIVFFGFHKR MSVTVVGTVE GGRPPTKIKT DLKKPIVNLA CHPRLPVFYV AYAEGLVRAY NVQTYAVHYT
0201: LQLPVDSTIK LMGAGAFGFH PTLEWVFIGD RGGTLLAWDV STERPNMIGI TQAGSQPITS VSWLPTLKLL VTISKDGGLQ VWKTRVIINN NRQPMETHFF
0301: ERAAIETMDI TKILTLQGGE AVYPLPRIKN LAVHPKFNLA AVIFQDMSAT EAAKNKAAYT REGRRQLFAV LQGARGSTAA VLKEKLLALG SSGILAEHQL
0401: QAQLQEQHLK GQSKLTISDV ARKAFLHSHF MEGHAKSGPI SRLPLVTISD PGNLLRDIPV CQPFHLELNF FNQENRVVQY PVRAFYLDGF NLMAHNLSSG
0501: ADNLYKKLYS TIPSNMECHP KYISYSPKQH MFLVVFELSG PSGVAHEVVL YWEQTDLQTV NSKGSSIKGR DATFLGPDDN QYAILEEDRT SLNLYNLKPI
0601: ATKEALENNA AVLEEEENTF AENPTANPTQ KQGPMQFTFE SEVDRIFSSP QESSLLYVIS GKHIGLAKLL TGYRLSTDNG LSITTKTDGK KFIKLKPNET
0701: VLQVHWQTTL RGPVAGILTN QRVLIASADL DILSSSSTKY DRGLPSYRSM LWVGPALIFS SATAISMLGW DNKVRSILST SFPRSVLLGA LNDRLLLVNP
0801: TDINPRQKKG VEIRSCLVGL LEPLLIGFAT MQQHFTQKID LSEVLYQITS RFDSLRVTPK SLDILSKGPP VCGDLAVSLS QAGPQFTQIM RCNYAIKALR
0901: FSAALSILKD EFLRSRDYPQ CPPTSHLFQR FRELGYACIK YGQFDSAKET FEAIADHESM LDLFICHLNP SALRRLAQKL EESGTDPELR RYLERILRVR
1001: STGWTQGVFA NFAAESMVPK GPEWAGGNWE IKTPTSMKSI PQWELAGEVM PYMRTTDAAI PSVIADHIGV YLGVMKGRGN VVEVSEKSLV KAMAAASSEN
1101: GQPASSELAL KNKANAASDS VGDSLARQLG VQIASADEQA KAAEEFKKTL YGVVDAGSSD EDESTSKTKR IQIRIRDKPA APAVDVNKLK EATKQLGLMA
1201: PPISRTRSSG TPQEFSQPAG PAPSAAPAMP SGAVDFFGTN TLVAPPQALT GGTGPVIGGL GVTAGPIPED FFQNTVPSQQ LANRLPPPGA ILQRMANPES
1301: GMNVGRPVPT QNMMGNVGLP DGGVPPQGPQ QGQFPQQQGQ FPQQQGIPMN PIGLPDGGVP PQSQALPSQP QGFQPAAPTP SQPIDLSALE GPGAAKQAAQ
1401: PPAPKAVRPG QVPRGAPAAE CYRMGLAHLE QNQLTDALNC LDEAFLALAK DQSREADIKA QATICAQYKI AVSLLQEIAR LQRVQGAGTL SAKEEMGRLS
1501: RHLASLPIQA KHRINCIRTA IKRNMEVQNF AYAKQMLDLL YSKAPPTKQD ELKSLIDMCV QRGLTNKSID PFEDPSQFCA VTLSRLSTIG HDVCDLCGAK
1601: FSALSAPGCV ICGMGSIKRS DALAGAGPVA SPFG
0101: EQTLVLHSPE KKTDHVSIDT EVHLALTPLE PIVFFGFHKR MSVTVVGTVE GGRPPTKIKT DLKKPIVNLA CHPRLPVFYV AYAEGLVRAY NVQTYAVHYT
0201: LQLPVDSTIK LMGAGAFGFH PTLEWVFIGD RGGTLLAWDV STERPNMIGI TQAGSQPITS VSWLPTLKLL VTISKDGGLQ VWKTRVIINN NRQPMETHFF
0301: ERAAIETMDI TKILTLQGGE AVYPLPRIKN LAVHPKFNLA AVIFQDMSAT EAAKNKAAYT REGRRQLFAV LQGARGSTAA VLKEKLLALG SSGILAEHQL
0401: QAQLQEQHLK GQSKLTISDV ARKAFLHSHF MEGHAKSGPI SRLPLVTISD PGNLLRDIPV CQPFHLELNF FNQENRVVQY PVRAFYLDGF NLMAHNLSSG
0501: ADNLYKKLYS TIPSNMECHP KYISYSPKQH MFLVVFELSG PSGVAHEVVL YWEQTDLQTV NSKGSSIKGR DATFLGPDDN QYAILEEDRT SLNLYNLKPI
0601: ATKEALENNA AVLEEEENTF AENPTANPTQ KQGPMQFTFE SEVDRIFSSP QESSLLYVIS GKHIGLAKLL TGYRLSTDNG LSITTKTDGK KFIKLKPNET
0701: VLQVHWQTTL RGPVAGILTN QRVLIASADL DILSSSSTKY DRGLPSYRSM LWVGPALIFS SATAISMLGW DNKVRSILST SFPRSVLLGA LNDRLLLVNP
0801: TDINPRQKKG VEIRSCLVGL LEPLLIGFAT MQQHFTQKID LSEVLYQITS RFDSLRVTPK SLDILSKGPP VCGDLAVSLS QAGPQFTQIM RCNYAIKALR
0901: FSAALSILKD EFLRSRDYPQ CPPTSHLFQR FRELGYACIK YGQFDSAKET FEAIADHESM LDLFICHLNP SALRRLAQKL EESGTDPELR RYLERILRVR
1001: STGWTQGVFA NFAAESMVPK GPEWAGGNWE IKTPTSMKSI PQWELAGEVM PYMRTTDAAI PSVIADHIGV YLGVMKGRGN VVEVSEKSLV KAMAAASSEN
1101: GQPASSELAL KNKANAASDS VGDSLARQLG VQIASADEQA KAAEEFKKTL YGVVDAGSSD EDESTSKTKR IQIRIRDKPA APAVDVNKLK EATKQLGLMA
1201: PPISRTRSSG TPQEFSQPAG PAPSAAPAMP SGAVDFFGTN TLVAPPQALT GGTGPVIGGL GVTAGPIPED FFQNTVPSQQ LANRLPPPGA ILQRMANPES
1301: GMNVGRPVPT QNMMGNVGLP DGGVPPQGPQ QGQFPQQQGQ FPQQQGIPMN PIGLPDGGVP PQSQALPSQP QGFQPAAPTP SQPIDLSALE GPGAAKQAAQ
1401: PPAPKAVRPG QVPRGAPAAE CYRMGLAHLE QNQLTDALNC LDEAFLALAK DQSREADIKA QATICAQYKI AVSLLQEIAR LQRVQGAGTL SAKEEMGRLS
1501: RHLASLPIQA KHRINCIRTA IKRNMEVQNF AYAKQMLDLL YSKAPPTKQD ELKSLIDMCV QRGLTNKSID PFEDPSQFCA VTLSRLSTIG HDVCDLCGAK
1601: FSALSAPGCV ICGMGSIKRS DALAGAGPVA SPFG
0001: MEWATVQHLD LRHVGRGVSK PLQPHTAAFH PSQAVIAVAV GSHIMEFDAL TGCKIASIDI GSPAVRMLYS PTSSNAVVAI LEDCTIRSCD FETEQTCVLH
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASSFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPKILSQQGG EAVYPLPRIK TLEVHPKLNL AALIFANMVG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEHKG
0401: QSQLTISDIA RKAFLYSHFM EGHAKTAPIS RLPLITVVDT KDQLKDIPVC QPFHLELNFF NKPNRVLHYP VRSFYIEGLN LMAHNLCSGT DNIYKKLYTS
0501: IPGNVEYHSK HIVYSRKRHL FLVVFEFSGA TNEVVLYWEN TGSQLPNSKG STAKGCDAAF IGPNDDQFAI LDEDKTGLSM YILPKLTTME ENEKNLLSEE
0601: NQKKEADPSG IQGPQQFMFE TEVDRVFSTP IESTLMFACN GTQIGLAKLF QGYRLSASDG HYISTQGEGR KSIKLKKHEI ALQVQWQETP RGYVAGILTT
0701: QRVLMVSADF DILASSSTKY DRGLPSFRSL LWVGPALLFS TTTAVCLLGW DGKVRTILSI STPYAALVGA LNDRLLLAHP TDISPKQKKG IEIKSCLVGL
0801: LEPLLIGFST MQQTFEQKVD LSEILYQITT RFDSLRITPR SLDILARSAP VCGDLAVSLA QAGPQFNQVL RCAYAIKALR FSTALSVLKD EFLRSRDYPK
0901: CPPTSLLFQR FRQLGYACIK YGQFDSAKET FEVIGDYESM LDLFICHLNP SAMRRLAQKL EEESGDPELR RYCERILRVR STGWTQGIFA NFAAESMVPK
1001: GPEWGGGNWE IKTPTDMKSI PKWELAGEVM PYMKNEDGTI PSIVADHIGV YLGCVKGRVN VVEIKEDSLV SKPGGLSLLG KPVSDKPLAL PAGESSSMMG
1101: LESLGKQNVA DEQAKAAEEF KKTMYGATGD GSSSDEEGVT KPKKLQIRIR EKPTSTTVDV NKLKEAAKTF KLGDGLGLTM SRTKSINAGS QDLGQMLSQP
1201: SSSTVATTTA PSSASAPVDP FAMSSWTQQP QPVSQPAPPG VAAPIPEDFF QNTIPSVEVA KTLPPPGTYL SKMDQAARAA IAAQGGPNQA NNTPLPDIGL
1301: PDGGVPQQYP QQTSQQPGAP FQTVGLPDGG VRQQYPGQNQ VPSQVPVSTQ PLDLSVLGVP NTGDSGKPPG QPQSPPASVR PGQVPRGAAA PVCFKTGLAH
1401: LEQNQLPDAL SCFDEAFLAL AKDQSRGADI KAQATICAQY KIAVTLLREI LRLQRVQGAS ALSAKDEMAR LSRHLASLPL LAKHRINCIR TAIKRNMEVQ
1501: NYGYSKQMLE LLLSKAPASK QEELRGLVDL CVQRGTSNKS IDPLEDPSQL CSATLSRLST IGYDVCDLCG AKFAALSSPG CIICGMGSIK RSDALAGPAP
1601: VSTPFG
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASSFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPKILSQQGG EAVYPLPRIK TLEVHPKLNL AALIFANMVG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEHKG
0401: QSQLTISDIA RKAFLYSHFM EGHAKTAPIS RLPLITVVDT KDQLKDIPVC QPFHLELNFF NKPNRVLHYP VRSFYIEGLN LMAHNLCSGT DNIYKKLYTS
0501: IPGNVEYHSK HIVYSRKRHL FLVVFEFSGA TNEVVLYWEN TGSQLPNSKG STAKGCDAAF IGPNDDQFAI LDEDKTGLSM YILPKLTTME ENEKNLLSEE
0601: NQKKEADPSG IQGPQQFMFE TEVDRVFSTP IESTLMFACN GTQIGLAKLF QGYRLSASDG HYISTQGEGR KSIKLKKHEI ALQVQWQETP RGYVAGILTT
0701: QRVLMVSADF DILASSSTKY DRGLPSFRSL LWVGPALLFS TTTAVCLLGW DGKVRTILSI STPYAALVGA LNDRLLLAHP TDISPKQKKG IEIKSCLVGL
0801: LEPLLIGFST MQQTFEQKVD LSEILYQITT RFDSLRITPR SLDILARSAP VCGDLAVSLA QAGPQFNQVL RCAYAIKALR FSTALSVLKD EFLRSRDYPK
0901: CPPTSLLFQR FRQLGYACIK YGQFDSAKET FEVIGDYESM LDLFICHLNP SAMRRLAQKL EEESGDPELR RYCERILRVR STGWTQGIFA NFAAESMVPK
1001: GPEWGGGNWE IKTPTDMKSI PKWELAGEVM PYMKNEDGTI PSIVADHIGV YLGCVKGRVN VVEIKEDSLV SKPGGLSLLG KPVSDKPLAL PAGESSSMMG
1101: LESLGKQNVA DEQAKAAEEF KKTMYGATGD GSSSDEEGVT KPKKLQIRIR EKPTSTTVDV NKLKEAAKTF KLGDGLGLTM SRTKSINAGS QDLGQMLSQP
1201: SSSTVATTTA PSSASAPVDP FAMSSWTQQP QPVSQPAPPG VAAPIPEDFF QNTIPSVEVA KTLPPPGTYL SKMDQAARAA IAAQGGPNQA NNTPLPDIGL
1301: PDGGVPQQYP QQTSQQPGAP FQTVGLPDGG VRQQYPGQNQ VPSQVPVSTQ PLDLSVLGVP NTGDSGKPPG QPQSPPASVR PGQVPRGAAA PVCFKTGLAH
1401: LEQNQLPDAL SCFDEAFLAL AKDQSRGADI KAQATICAQY KIAVTLLREI LRLQRVQGAS ALSAKDEMAR LSRHLASLPL LAKHRINCIR TAIKRNMEVQ
1501: NYGYSKQMLE LLLSKAPASK QEELRGLVDL CVQRGTSNKS IDPLEDPSQL CSATLSRLST IGYDVCDLCG AKFAALSSPG CIICGMGSIK RSDALAGPAP
1601: VSTPFG
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J0P2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.