Skip to main content
crop-pal logo
Thale cress
Search for another protein from :
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra036092.1-P Field mustard cytosol 89.47 92.8
CDX77930 Canola cytosol 91.7 90.74
CDY17791 Canola cytosol 91.76 90.36
KRH28498 Soybean cytosol 10.1 76.53
Solyc02g090570.2.1 Tomato nucleus 73.92 73.64
KRH57890 Soybean endoplasmic reticulum 70.76 70.41
KRH04644 Soybean endoplasmic reticulum 70.51 70.16
GSMUA_Achr10P... Banana cytosol 68.22 69.82
KRH76964 Soybean nucleus 69.89 69.54
Os09t0407950-01 Rice plasma membrane 40.52 65.86
KXG38043 Sorghum cytosol 67.1 65.4
TraesCS7A01G009900.1 Wheat cytosol 64.56 64.8
TraesCS7D01G009600.1 Wheat golgi 65.49 64.77
TraesCS4A01G485300.1 Wheat cytosol 65.49 64.69
Zm00001d033368_P007 Maize cytosol 65.24 63.59
HORVU5Hr1G067090.1 Barley cytosol 65.61 62.74
Os09t0408000-01 Rice cytosol, nucleus 18.15 60.29
VIT_00s0961g00020.t01 Wine grape cytosol, extracellular, plastid 8.05 53.28
VIT_00s0783g00010.t01 Wine grape cytosol 16.67 47.44
Protein Annotations
Gene3D:2.130.10.10MapMan:22.1.4.4EntrezGene:824223ProteinID:AEE78684.1ArrayExpress:AT3G50590EnsemblPlantsGene:AT3G50590
RefSeq:AT3G50590TAIR:AT3G50590RefSeq:AT3G50590-TAIR-GEnsemblPlants:AT3G50590.1TAIR:AT3G50590.1Unigene:At.1450
UniProt:F4J0P2GO:GO:0000045GO:GO:0000421GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0005886
GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0016043InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986RefSeq:NP_190628.6PO:PO:0000013
PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PFscan:PS50082
PFscan:PS50294PANTHER:PTHR19878PANTHER:PTHR19878:SF4SMART:SM00320SUPFAM:SSF50978TMHMM:TMhelix
UniParc:UPI0001E92D97InterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeatInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfSEG:seg
Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J0P2]
Coordinates
chr3:+:18771019..18779502
Molecular Weight (calculated)
176316.0 Da
IEP (calculated)
8.424
GRAVY (calculated)
-0.166
Length
1614 amino acids
Sequence
(BLAST)
0001: MEWATVQHLD LRHVGRGVSK PLQPHTAAFH PSQAVIAVAV GSHIMEFDAL TGCKIASIDI GSPAVRMLYS PTSSNAVVAI LEDCTIRSCD FETEQTCVLH
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASSFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPKILSQQGG EAVYPLPRIK TLEVHPKLNL AALIFANMVG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEHKG
0401: QSQLTISDIA RKAFLYSHFM EGHAKTAPIS RLPLITVVDT KDQLKDIPVC QPFHLELNFF NKPNRVLHYP VRSFYIEGLN LMAHNLCSGT DNIYKKLYTS
0501: IPGNVEYHSK HIVYSRKRHL FLVVFEFSGA TNEVVLYWEN TGSQLPNSKG STAKGCDAAF IGPNDDQFAI LDEDKTGLSM YILPKLTTME ENEKNLLSEE
0601: NQKKEADPSG IQGPQQFMFE TEVDRVFSTP IESTLMFACN GTQIGLAKLF QGYRLSASDG HYISTQGEGR KSIKLKKHEI ALQSFYSLPF NVVYIWPVLF
0701: EIKTIMFRKL TRHVQWQETP RGYVAGILTT QRVLMVSLLW VGPALLFSTT TAVCLLGWDG KVRTILSIST PYAALVGALN DRLLLAHPTD ISPKQKKGIE
0801: IKSCLVGLLE PLLIGFSTMQ QTFEQKVDLS EILYQITTRF DSLRITPRSL DILARSAPVC GDLAVSLAQA GPQFNQVLRC AYAIKALRFS TALSVLKDEF
0901: LRSRDYPKCP PTSLLFQRFR QLGYACIKYG QFDSAKETFE VIGDYESMLD LFICHLNPSA MRRLAQKLEE ESGDPELRRY CERILRVRST GWTQGIFANF
1001: AAESMVPKGP EWGGGNWEIK TPTDMKSIPK WELAGEVMPY MKNEDGTIPS IVADHIGVYL GCVKGRVNVV EIKEDSLVSK PGGLSLLGKP VSDKPLALPA
1101: GESSSMMGLE SLGKQNVADE QAKAAEEFKK TMYGATGDGS SSDEEGVTKP KKLQIRIREK PTSTTVDVNK LKEAAKTFKL GDGLGLTMSR TKSINAGSQD
1201: LGQMLSQPSS STVATTTAPS SASAPVDPFA MSSWTQQPQP VSQPAPPGVA APIPEDFFQN TIPSVEVAKT LPPPGTYLSK MDQAARAAIA AQGGPNQANN
1301: TPLPDIGLPD GGVPQQYPQQ TSQQPGAPFQ TVGLPDGGVR QQYPGQNQVP SQVPVSTQPL DLSVLGVPNT GDSGKPPGQP QSPPASVRPG QVPRGAAAPV
1401: CFKTGLAHLE QNQLPDALSC FDEAFLALAK DQSRGADIKA QATICAQYKI AVTLLREILR LQRVQGASAL SAKDEMARLS RHLASLPLLA KHRINCIRTA
1501: IKRNMEVQNY GYSKQMLELL LSKAPASKQE ELRGLVDLCV QRGTSNKSID PLEDPSQLCS ATLSRLSTIG YDVCDLCGAK FAALSSPGCI ICGMGSIKRS
1601: DALAGPAPVS TPFG
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.