CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90331
KRG94459
KRH02873
KRH04644
KRH06999
KRH09738
KRH12557
KRH28498
KRH37507
KRH41754
KRH44443
KRH47463
KRH51589
KRH57890
KRH60454
KRH60909
KRH76964

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24710.1	KRH41754	AT1G04810.1	24529374
AT5G24710.1	KRH60454	AT1G04810.1	24529374
AT5G24710.1	KRH09738	AT1G15370.1	24529374
AT5G24710.1	KRH44443	AT1G15370.1	24529374
AT5G24710.1	KRH47463	AT1G15370.1	24529374
AT5G24710.1	KRH51589	AT1G20760.1	24529374
AT5G24710.1	KRH60909	AT1G20760.1	24529374
AT5G24710.1	KRH12557	AT2G05830.1	24529374
AT5G24710.1	KRH37507	AT2G05830.1	24529374
AT5G24710.1	KRG94459	AT3G01780.1	24529374
AT5G24710.1	KRH06999	AT3G01780.1	24529374
AT5G24710.1	KRH04644	AT3G50590.1	24529374
AT5G24710.1	KRH28498	AT3G50590.1	24529374
AT5G24710.1	KRH57890	AT3G50590.1	24529374
AT5G24710.1	KRH76964	AT3G50590.1	24529374
AT5G24710.1	KRG90331	AT5G57460.1	24529374
AT5G24710.1	KRH02873	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89827	Soybean	cytosol	94.53	85.47
Os05t0297001-01	Rice	extracellular	8.68	38.57
KRG96637	Soybean	endoplasmic reticulum	94.21	25.93
KRH68370	Soybean	endoplasmic reticulum	92.93	21.38
CDY19826	Canola	mitochondrion	71.38	17.92
GSMUA_Achr1P28020_001	Banana	mitochondrion	69.77	17.33
GSMUA_Achr6P21400_001	Banana	mitochondrion	73.63	17.32
PGSC0003DMT400046936	Potato	mitochondrion	76.85	16.94
AT5G24710.1	Thale cress	mitochondrion	74.92	16.92
Solyc01g102510.2.1	Tomato	nucleus	76.53	16.6
Os01t0653800-02	Rice	plasma membrane	73.31	16.56
TraesCS3A01G236500.2	Wheat	mitochondrion	71.38	16.37
TraesCS3B01G263200.1	Wheat	golgi, unclear	71.38	16.32
KXG33009	Sorghum	mitochondrion	72.03	16.23
CDX87116	Canola	mitochondrion	71.38	16.15
TraesCS3D01G237000.1	Wheat	mitochondrion	71.38	15.91
Zm00001d044026_P011	Maize	mitochondrion	71.38	15.26
Zm00001d011483_P004	Maize	mitochondrion	72.35	15.01
VIT_08s0056g00040.t01	Wine grape	cytosol	80.39	13.71
Os01t0653350-00	Rice	mitochondrion	3.22	4.37
HORVU1Hr1G042290.1	Barley	mitochondrion	0.0	0.0
Bra028077.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, plastid	0.0	0.0

Protein Annotations

EMBL:ACUP02011086	EnsemblPlants:KRG99486	EnsemblPlantsGene:GLYMA_18G148900	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR45521
ProteinID:KRG99486	ProteinID:KRG99486.1	ScanProsite:PS00678	SEG:seg	SUPFAM:SSF50978	UniParc:UPI0002956BF4
UniProt:K7MSD9	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:26392445..26395107

Molecular Weight (calculated)

33216.2 Da

IEP (calculated)

8.617

GRAVY (calculated)

0.236

Length

311 amino acids

Sequence
(BLAST)

001: MKFLYRIGGD GPLVAFGASD GVIRVLSMMT WKLVRRYTGG HKGSISCLMS FMAASGEAHD GGVVAVELSM VMGGAPQLIT IGVDKTLAIW DTVSFKVYCM
101: VAHTLQPHLV AIGTNIGVII CEFDARSLPP VAPLPTPSDS REHSAIFVIE RELKLLNFQL NNSANPSLGN NSSLSETGRP KGDFFEPLLV KQGKKHISTP
201: VPHDSHLVLS VSSSGKYLAI VWPDIPYFSV FNVSDWSIVD SGSARLLAWD TCRDRFSILE SALPPRIPIV PKGSSSKRAK EAVAAQAAAA AAAAASTASY
301: TFFGFVTSGL F

Best Arabidopsis Sequence Match ( AT5G24710.1 )
(BLAST)

0001: MLRARAFRQT NGKIVKIQVH PTHPWLVTAD DSDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG ESDYKAKPTE AIRGGSVKQV KFYDDDVRYW
0101: QLWRNRSAAA ESPSAVNHLT SAFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSGGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTGG HKGSIYCLMN FMASSGEALL VSGGSDGLLV LWSADHGADS RELVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHRKL RVYCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAPLP ALPGSRENSA IYILGRELKL LNFQLSNTAN PSLGNNSALS ESGLSKGDPG EQLTVKQTKK QIVAPVPHDS YSVLSVSSSG KYVAVVWPDI
0501: LYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FAILESVLPH RMPIIPKGGS SRKAKEAAAA AAQAAAAASA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVAATAIST IQSMPLSGFG NSNVSSFSSY DDGFSSQKSA ESAPLNYQLY SWENFEPVGG MLPQPEWTAW DQTVEYCAFA
0701: YQQYMVISSL RPQYRYLGDV AIAHATGAVW HRRQLFVATP TTIECVFVDA GVSEIDIETR KMKEEMKLKE AQARAVAEHG ELALITVEGS QAAKQERISL
0801: RPPMLQVVRL ASFQNAPSVP PFLSLPRQSR GDSDDIMDER RVNEVAVGGG GVSVAVTRFP VEQKRPVGPL VVAGVRDGVL WLIDRYMCAH AISLNHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALHCLL TMSNSKDIGQ DGVGLDLSDI LSLTATKKED
1001: VVEAVEGIVK FAKEFLDLID AADATGHADI AREALKRLAT AGSVKGALQG HELRGLSLRL ANHGELTRLS GLVNNLISIG LGRESAFSAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAHAHGR PTLKNLVQAW NKTLQKEVEK APSSKTDAAS AFLASLEDPK LTSLSDASRK PPIEILPPGM SSIFASITAP KKPLLTQKTA
1201: QPEVAKPLAL EEPTKPLAIE APPSSEAPQT ESAPETAAAA ESPAPETAAV AESPAPGTAA VAEAPASETA AAPVDGPVTE TVSEPPPVEK EETSLEEKSD
1301: PSSTPNTETA TSTENTSQTT TTPESVTTAP PEPITTAPPE TVTTTAVKPT ENAATERRVT NYPPIRSQPI DFDFLNG

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KIH8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.