CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71540
CDX73858
CDX73860
CDX77930
CDX87116
CDX87673
CDX88623
CDY01041
CDY02431
CDY05294
CDY06613
CDY06725
CDY08508
CDY11868
CDY12012
CDY17300
CDY17791
CDY19826
CDY19918
CDY20790
CDY22370
CDY24664
CDY25228
CDY25907
CDY36552
CDY36727
CDY37153
CDY38299
CDY39638
CDY55980
CDY56598
CDY70589
CDY71251

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20760.1	CDY36552	AT1G15370.1	24529374
AT1G20760.1	CDY39638	AT1G15370.1	24529374
AT1G20760.1	CDY55980	AT1G15370.1	24529374
AT1G20760.1	CDY71251	AT1G15370.1	24529374
AT1G20760.1	CDY06725	AT1G47830.1	24529374
AT1G20760.1	CDY70589	AT1G47830.1	24529374
AT1G20760.1	CDX87673	AT3G01780.1	24529374
AT1G20760.1	CDY37153	AT3G01780.1	24529374
AT1G20760.1	CDY05294	AT3G06810.1	24529374
AT1G20760.1	CDY24664	AT3G06810.1	24529374
AT1G20760.1	CDX73858	AT3G11630.1	24529374
AT1G20760.1	CDX73860	AT3G11630.1	24529374
AT1G20760.1	CDY01041	AT3G11630.1	24529374
AT1G20760.1	CDY08508	AT3G11630.1	24529374
AT1G20760.1	CDY56598	AT3G11630.1	24529374
AT1G20760.1	CDX77930	AT3G50590.1	24529374
AT1G20760.1	CDY17791	AT3G50590.1	24529374
AT1G20760.1	CDX87116	AT5G24710.1	24529374
AT1G20760.1	CDY19826	AT5G24710.1	24529374
AT1G20760.1	CDX71540	AT5G43060.1	24529374
AT1G20760.1	CDY02431	AT5G43060.1	24529374
AT1G20760.1	CDY22370	AT5G43060.1	24529374
AT1G20760.1	CDY25228	AT5G43060.1	24529374
AT1G20760.1	CDY06613	AT5G55070.1	24529374
AT1G20760.1	CDY12012	AT5G55070.1	24529374
AT1G20760.1	CDY17300	AT5G55070.1	24529374
AT1G20760.1	CDY19918	AT5G55070.1	24529374
AT1G20760.1	CDY20790	AT5G55070.1	24529374
AT1G20760.1	CDY36727	AT5G55070.1	24529374
AT1G20760.1	CDX88623	AT5G57460.1	24529374
AT1G20760.1	CDY11868	AT5G57460.1	24529374
AT1G20760.1	CDY25907	AT5G57460.1	24529374
AT1G20760.1	CDY38299	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29508	Canola	cytosol	96.77	96.48
CDY01356	Canola	cytosol	89.39	90.31
CDY31869	Canola	cytosol	88.89	88.8
AT1G20760.1	Thale cress	cytosol	88.99	86.46
CDX96625	Canola	cytosol	85.35	86.22
CDY33644	Canola	cytosol	83.84	83.5
KRH60909	Soybean	endoplasmic reticulum	54.24	50.56
KRH51589	Soybean	endoplasmic reticulum	53.74	49.44
VIT_18s0122g01080.t01	Wine grape	cytosol	50.2	49.4
PGSC0003DMT400025666	Potato	cytosol	7.37	45.06
GSMUA_Achr5P19150_001	Banana	endoplasmic reticulum	40.81	42.66
GSMUA_Achr8P13420_001	Banana	cytosol	41.01	42.65
Solyc02g082530.1.1	Tomato	nucleus	3.94	40.21
Os03t0130500-01	Rice	plasma membrane	42.93	39.79
EER92924	Sorghum	cytosol	41.92	39.71
TraesCS4D01G321600.1	Wheat	cytosol	42.63	38.75
TraesCS4B01G324500.1	Wheat	cytosol	42.02	38.63
TraesCS5A01G497000.1	Wheat	cytosol	42.22	38.56
GSMUA_Achr4P11750_001	Banana	cytosol	41.31	38.12
HORVU4Hr1G082280.2	Barley	cytosol	42.42	37.14
Solyc04g082560.2.1	Tomato	cytosol	46.06	37.13
CDY00394	Canola	cytosol	41.92	36.28
Os06t0728600-00	Rice	plasma membrane	32.32	35.79
CDY08192	Canola	cytosol	42.02	35.77
CDY04654	Canola	cytosol	42.32	35.6
CDY38814	Canola	cytosol	40.81	35.31
Zm00001d048338_P035	Maize	cytosol	38.69	35.3
CDX96582	Canola	cytosol	40.3	34.91
CDY01320	Canola	cytosol	41.31	34.63
Zm00001d027503_P036	Maize	cytosol	36.77	34.31
Zm00001d037125_P009	Maize	cytosol	39.09	32.04
EER89004	Sorghum	cytosol	39.39	31.81
Zm00001d014862_P002	Maize	cytosol	38.89	31.79
TraesCS7B01G476800.3	Wheat	cytosol	39.09	29.79
TraesCS7D01G539600.2	Wheat	cytosol	38.79	29.72
TraesCS7A01G553100.1	Wheat	cytosol	38.79	29.68
HORVU7Hr1G121230.4	Barley	cytosol	37.58	28.7
CDY25408	Canola	cytosol	10.61	20.0
CDY29816	Canola	cytosol	10.51	19.77
CDY50093	Canola	cytosol	10.4	19.4
CDY16689	Canola	cytosol	10.3	18.68
CDX94536	Canola	cytosol	10.3	18.65
CDY50090	Canola	cytosol	10.4	18.07

Protein Annotations

Gene3D:1.10.238.10	MapMan:22.1.4.7	GO:A0A078JLT3	UniProt:A0A078JLT3	EnsemblPlants:CDY66337	ProteinID:CDY66337
ProteinID:CDY66337.1	ncoils:Coil	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:EH_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00053394001	InterPro:IPR000261
InterPro:IPR002048	PFAM:PF12763	ScanProsite:PS00018	PFscan:PS50031	PFscan:PS50222	PANTHER:PTHR11216
PANTHER:PTHR11216:SF116	SMART:SM00027	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0004EDC125	SEG:seg

Description

BnaCnng50390DBnaCnng50390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JLT3]

Coordinates

chrLK035202:-:5978..10972

Molecular Weight (calculated)

106620.0 Da

IEP (calculated)

4.945

GRAVY (calculated)

-0.773

Length

990 amino acids

Sequence
(BLAST)

001: MAGQNPNMDQ FEAYFKRADL DGDGRISGAE AVGFFQGSGL PKQVLAQIWL LSDRSRSGFL GRQDFYNSLR LVTVAQSKRD LTPEIVNAAL NTPAAAKIPP
101: PKINLSAIPA PQPNPAATAA RPVGSTGHQN VGFRGPGAPN ANANQNYFPP QQNQQVRPNQ VVSGMTSLRP TAAGPEHRPN ALPGQFQPVP VGSVSPPPQA
201: VPTSAPGPGS SPFNLNNLYA GNTSGYSSGF GGGSLVAPSP GLKPESQIDP RALVVSGNGG DMFSSFQQKQ EPTLSNSSIS SAIVPASAGT QPPVKPNALD
301: SLQNTFSMLP SGNQPQQPRP AASSQQPRPA FSSQPPVVSS QGPSSGLPHA SAVGSGHSVP AGNNQPPWPK MKPSDVQKYT KVFVGVDTDK DGKITGEQAR
401: NLFLSWRLPR EVLKHVWELS DQDNDTMLSL REFCISLYLM ERYREGRPLP TSLPSSIMYD ETLLSISGAP SHGYANAGWG SGQGFVQQPV MGPRPVTQTG
501: TRPPVPAPVP HPGSGIGPNQ QRNQAPALDD PFASHLGNGH SASSNLQETA TDGEKVEEKK NAYMDSREKL EYYRTKMQDI VLYKSRCDNR LNEISERASA
601: DKREAETLAK KYEEKYKQVA ELGSKLTIEE ARFREIEGRK MELSQAIVNM EQGGSADGLL QVRADRIQSD LEELMKALTE RCKKHGLEVK SKALVDLPAG
701: WQPGLQEGAA LWDEEWDKFE DEGFGNEITF DKSKEQNSSG EKENGTVDDG SGPPDSPTHL DENYGPFSET SDRHHESEDD SGRSPRDSPV SRTGDTEIPS
801: PDSHGKNSEF FDDSNWASAF DTNDDVDSVW GFDASKSQDG DYFGSGGDFG GNSARADSPT SRSFGGQRKS TYAFDDSVPS TPLSRFGNSP PRFSDASARD
901: SNFDSFSRFD SFNTSEAGAD FGGAAFSRFD SINSSRDFGG PSLSRFDSMN STKDHGYSFD DADPFGSTGP FKVSSDDQSP KKKSDNWNSF

Best Arabidopsis Sequence Match ( AT1G20760.1 )
(BLAST)

0001: MAGQNPNMDQ FEAYFKRADL DGDGRISGAE AVGFFQGSGL SKQVLAQIWS LSDRSHSGFL DRQNFYNSLR LVTVAQSKRD LTPEIVNAAL NTPAAAKIPP
0101: PKINLSAIPA PRPNPAATTV GPVSGFGGPG APNAIVNQNY FPPQQNQQMR PNQGISGLTS LRPAAGPEYR PSALSGQFQP VPVGSVTHPP QPVPTSVSGP
0201: GSSTFNLNSL YAGAGNTSGY SSGFGGGSLA APSPGLKQES HIDPKALVVS GNGGDMFSSF QQKQEPTLSN SSISSAIVPT SAGIQPPTKP NALDSLQSTF
0301: SMLPSGNQLQ QPRPAASSQP AVSSQGPSSG LPPGSAVGSG HSTPAGNNQP PWPKMKPSDV QKYTKVFMEV DSDKDGKITG EQARNLFLSW RLPREVLKHV
0401: WELSDQDNDT MLSLREFCIS LYLMERYREG RPLPTALPSS IMFDETLLSI SGAPSHGYAN AGWGSGQGFV QQPGMGARPI TPTTGMRPPV PAPGPQPGSG
0501: IPPNQPRNQA PVLDAPFANH LGNGYSASSN LPEAAADEEK VDEKQNAYMD SREKLDYYRT KMQDIVLYKS RCDNRLNEIS ERASADKREA ETLAKKYEEK
0601: YKQVAEIGSK LTIEEARFRE IEGRKMELSQ AIVNMEQGGS ADGLLQVRAD RIQSDLEELM KALTERCKKH GLEVNSKALV DLPAGWQPGI QEGAALWDEE
0701: WDKFEDEGFG NEITFDKSKE QNSSGEKENG TVDDGSGPPD SPTHVEDNYG PFSETSDRHH ESEYGTTHSE DRSPRDSPVS RNATEVPSPD YSQGKNSEFF
0801: DDSNWASAFD TNDDVDSVWG FDASKSQDGD YFGSGDDFGG NTARADSPSS RSFGAQRKSQ FAFDDSVPST PLSRFGNSPP RFSDASARDN NFDSFSRFDS
0901: FNTSEAGAGF SSQPERLSRF DSINSSKDFG GAAFSRFDSI NSSRDVTGAE KFSRFDSINS SKDFGGPSLS RFDSMNSTKD FSGSHGYSFD DADPFGSTGP
1001: FKVSSDESPT KRSDNWNSF

Arabidopsis Description

Calcium-binding EF hand family protein [Source:UniProtKB/TrEMBL;Acc:Q9LM78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.