Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G20290.1 | CDX90725 | AT4G09570.1 | 19130088 |
AT3G20290.1 | CDY05064 | AT4G09570.1 | 19130088 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY25408 | Canola | cytosol | 93.03 | 94.1 |
CDY29816 | Canola | cytosol | 92.47 | 93.35 |
AT3G20290.1 | Thale cress | cytosol | 93.79 | 91.38 |
CDY50090 | Canola | cytosol | 97.74 | 91.05 |
Bra038259.1-P | Field mustard | cytosol | 97.55 | 90.88 |
VIT_19s0090g01130.t01 | Wine grape | cytosol | 83.43 | 81.28 |
KRH73798 | Soybean | cytosol | 82.11 | 79.42 |
Solyc07g064910.2.1 | Tomato | cytosol | 80.41 | 78.35 |
PGSC0003DMT400033476 | Potato | cytosol | 80.41 | 78.35 |
GSMUA_Achr3P20100_001 | Banana | cytosol, endoplasmic reticulum | 63.28 | 78.14 |
Solyc12g014460.1.1 | Tomato | cytosol | 80.04 | 77.98 |
PGSC0003DMT400057437 | Potato | cytosol | 80.04 | 77.98 |
KRG98685 | Soybean | cytosol | 77.02 | 75.6 |
PGSC0003DMT400037353 | Potato | cytosol | 76.27 | 74.59 |
Solyc10g006110.2.1 | Tomato | cytosol | 75.71 | 74.03 |
CDY16689 | Canola | cytosol | 73.07 | 71.06 |
CDX94536 | Canola | cytosol | 72.88 | 70.75 |
CDX96625 | Canola | cytosol | 19.21 | 10.41 |
CDY66337 | Canola | cytosol | 19.4 | 10.4 |
CDY31869 | Canola | cytosol | 19.21 | 10.29 |
CDY29508 | Canola | cytosol | 19.21 | 10.27 |
CDY01356 | Canola | cytosol | 18.46 | 10.0 |
CDY33644 | Canola | cytosol | 18.46 | 9.86 |
CDY38814 | Canola | cytosol | 20.34 | 9.44 |
CDY00394 | Canola | cytosol | 20.34 | 9.44 |
CDY08192 | Canola | cytosol | 20.34 | 9.29 |
CDX96582 | Canola | cytosol | 19.96 | 9.27 |
CDY04654 | Canola | cytosol | 20.53 | 9.26 |
CDY01320 | Canola | cytosol | 20.34 | 9.14 |
Protein Annotations
Gene3D:1.10.238.10 | Gene3D:1.10.268.20 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078IM41 | UniProt:A0A078IM41 |
EnsemblPlants:CDY50093 | ProteinID:CDY50093 | ProteinID:CDY50093.1 | InterPro:Dynamin_SF | InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom |
InterPro:EHD_N | InterPro:EH_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
GO:GO:0005515 | GO:GO:0005525 | EnsemblPlantsGene:GSBRNA2T00095878001 | InterPro:G_DYNAMIN_dom | InterPro:IPR000261 | InterPro:IPR002048 |
InterPro:IPR030381 | InterPro:P-loop_NTPase | PFAM:PF00350 | PFAM:PF12763 | PFAM:PF16880 | PFscan:PS50031 |
PFscan:PS50222 | PFscan:PS51718 | PANTHER:PTHR11216 | PANTHER:PTHR11216:SF114 | SMART:SM00027 | SUPFAM:SSF47473 |
SUPFAM:SSF52540 | UniParc:UPI0004EE380F | SEG:seg | : | : | : |
Description
BnaC01g32680DBnaC01g32680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IM41]
Coordinates
chrLK032879:+:57370..60905
Molecular Weight (calculated)
59197.2 Da
IEP (calculated)
7.214
GRAVY (calculated)
-0.274
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIDSVAAGS CSKENQLIYK EWFEFADSAD GDGRITGSDA IKFFSMSNLP RPELKQVWAI ADAKRQGYLG FKDFIVAMQL VSLAQTGHEI SHDVLHSDGM
101: ATKALINMNP PVMEGLGVLM AKKKHSSSKS SDLNVNGSPS ADASLTAHWF SSKSSKKISL SSVTSIVDGL KRLYIQKLKP LEVAYRFNDF VSPLLTNSDF
201: DAKPMVMLLG AHIGPEPTTD RFVVVMSGPD ERSIPGNTVA VQADMPFSGL TTFGTAFLSK FECSQMPHPL LEHVAFVDTP GVLSGEKQRT QRAYDFTGVT
301: SWFASKCDLI LLLFDPHKLD VSDEFKRVIS SLRGHDDKIR VVLNKADQVD TQQLMRVYGA LMWSLGKVLN TPEVSRVYIG SFSDKPINEA ATGPIGRELF
401: EKEQDDLLAD LKDIPKKACD RRINEFVKRA RAAKIHACII SHLKKEMPAI MGKAKAQQKL VDNLEDVFGK VQREHHLPKG DFPNVEQFRE VLSGYNIDKF
501: EKLKPKMLQT VDDMLGYDIP ELLKNFRNPY D
101: ATKALINMNP PVMEGLGVLM AKKKHSSSKS SDLNVNGSPS ADASLTAHWF SSKSSKKISL SSVTSIVDGL KRLYIQKLKP LEVAYRFNDF VSPLLTNSDF
201: DAKPMVMLLG AHIGPEPTTD RFVVVMSGPD ERSIPGNTVA VQADMPFSGL TTFGTAFLSK FECSQMPHPL LEHVAFVDTP GVLSGEKQRT QRAYDFTGVT
301: SWFASKCDLI LLLFDPHKLD VSDEFKRVIS SLRGHDDKIR VVLNKADQVD TQQLMRVYGA LMWSLGKVLN TPEVSRVYIG SFSDKPINEA ATGPIGRELF
401: EKEQDDLLAD LKDIPKKACD RRINEFVKRA RAAKIHACII SHLKKEMPAI MGKAKAQQKL VDNLEDVFGK VQREHHLPKG DFPNVEQFRE VLSGYNIDKF
501: EKLKPKMLQT VDDMLGYDIP ELLKNFRNPY D
001: MEIESVAAGS CSKENQMIYK EWFEFSDSDG DGRITGNDAI KFFTMSNLPR PELKQIWAIA DSKRQGYLGF KEFIVAMQLV SLAQTGHEIS HEVLISDVDF
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD
Arabidopsis Description
EHD1EHD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VAZ5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.