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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX90725
CDY05064

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY25408 Canola cytosol 93.03 94.1
CDY29816 Canola cytosol 92.47 93.35
AT3G20290.1 Thale cress cytosol 93.79 91.38
CDY50090 Canola cytosol 97.74 91.05
Bra038259.1-P Field mustard cytosol 97.55 90.88
VIT_19s0090g01130.t01 Wine grape cytosol 83.43 81.28
KRH73798 Soybean cytosol 82.11 79.42
Solyc07g064910.2.1 Tomato cytosol 80.41 78.35
PGSC0003DMT400033476 Potato cytosol 80.41 78.35
GSMUA_Achr3P20100_001 Banana cytosol, endoplasmic reticulum 63.28 78.14
Solyc12g014460.1.1 Tomato cytosol 80.04 77.98
PGSC0003DMT400057437 Potato cytosol 80.04 77.98
KRG98685 Soybean cytosol 77.02 75.6
PGSC0003DMT400037353 Potato cytosol 76.27 74.59
Solyc10g006110.2.1 Tomato cytosol 75.71 74.03
CDY16689 Canola cytosol 73.07 71.06
CDX94536 Canola cytosol 72.88 70.75
CDX96625 Canola cytosol 19.21 10.41
CDY66337 Canola cytosol 19.4 10.4
CDY31869 Canola cytosol 19.21 10.29
CDY29508 Canola cytosol 19.21 10.27
CDY01356 Canola cytosol 18.46 10.0
CDY33644 Canola cytosol 18.46 9.86
CDY38814 Canola cytosol 20.34 9.44
CDY00394 Canola cytosol 20.34 9.44
CDY08192 Canola cytosol 20.34 9.29
CDX96582 Canola cytosol 19.96 9.27
CDY04654 Canola cytosol 20.53 9.26
CDY01320 Canola cytosol 20.34 9.14
Protein Annotations
Gene3D:1.10.238.10Gene3D:1.10.268.20Gene3D:3.40.50.300MapMan:35.1GO:A0A078IM41UniProt:A0A078IM41
EnsemblPlants:CDY50093ProteinID:CDY50093ProteinID:CDY50093.1InterPro:Dynamin_SFInterPro:EF-hand-dom_pairInterPro:EF_hand_dom
InterPro:EHD_NInterPro:EH_domGO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005509
GO:GO:0005515GO:GO:0005525EnsemblPlantsGene:GSBRNA2T00095878001InterPro:G_DYNAMIN_domInterPro:IPR000261InterPro:IPR002048
InterPro:IPR030381InterPro:P-loop_NTPasePFAM:PF00350PFAM:PF12763PFAM:PF16880PFscan:PS50031
PFscan:PS50222PFscan:PS51718PANTHER:PTHR11216PANTHER:PTHR11216:SF114SMART:SM00027SUPFAM:SSF47473
SUPFAM:SSF52540UniParc:UPI0004EE380FSEG:seg:::
Description
BnaC01g32680DBnaC01g32680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IM41]
Coordinates
chrLK032879:+:57370..60905
Molecular Weight (calculated)
59197.2 Da
IEP (calculated)
7.214
GRAVY (calculated)
-0.274
Length
531 amino acids
Sequence
(BLAST)
001: MEIDSVAAGS CSKENQLIYK EWFEFADSAD GDGRITGSDA IKFFSMSNLP RPELKQVWAI ADAKRQGYLG FKDFIVAMQL VSLAQTGHEI SHDVLHSDGM
101: ATKALINMNP PVMEGLGVLM AKKKHSSSKS SDLNVNGSPS ADASLTAHWF SSKSSKKISL SSVTSIVDGL KRLYIQKLKP LEVAYRFNDF VSPLLTNSDF
201: DAKPMVMLLG AHIGPEPTTD RFVVVMSGPD ERSIPGNTVA VQADMPFSGL TTFGTAFLSK FECSQMPHPL LEHVAFVDTP GVLSGEKQRT QRAYDFTGVT
301: SWFASKCDLI LLLFDPHKLD VSDEFKRVIS SLRGHDDKIR VVLNKADQVD TQQLMRVYGA LMWSLGKVLN TPEVSRVYIG SFSDKPINEA ATGPIGRELF
401: EKEQDDLLAD LKDIPKKACD RRINEFVKRA RAAKIHACII SHLKKEMPAI MGKAKAQQKL VDNLEDVFGK VQREHHLPKG DFPNVEQFRE VLSGYNIDKF
501: EKLKPKMLQT VDDMLGYDIP ELLKNFRNPY D
Best Arabidopsis Sequence Match ( AT3G20290.3 )
(BLAST)
001: MEIESVAAGS CSKENQMIYK EWFEFSDSDG DGRITGNDAI KFFTMSNLPR PELKQIWAIA DSKRQGYLGF KEFIVAMQLV SLAQTGHEIS HEVLISDVDF
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD
Arabidopsis Description
EHD1EHD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VAZ5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.