Factsheet for PGSC0003DMT400057437

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002331
PGSC0003DMT400067082

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20290.1	PGSC0003DMT400002331	AT4G09570.1	19130088
AT3G20290.1	PGSC0003DMT400067082	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g064910.2.1	Tomato	cytosol	98.9	98.9
PGSC0003DMT400033476	Potato	cytosol	87.16	87.16
GSMUA_Achr3P20100_001	Banana	cytosol, endoplasmic reticulum	65.87	83.49
PGSC0003DMT400037353	Potato	cytosol	82.75	83.06
VIT_19s0090g01130.t01	Wine grape	cytosol	82.94	82.94
PGSC0003DMT400034517	Potato	cytosol	42.94	81.53
AT3G20290.1	Thale cress	cytosol	81.47	81.47
KRH73798	Soybean	cytosol	82.02	81.42
CDY25408	Canola	cytosol	77.43	80.38
CDY29816	Canola	cytosol	77.43	80.23
Bra035794.1-P	Field mustard	cytosol	77.25	80.19
CDY50093	Canola	cytosol	77.98	80.04
KRG98685	Soybean	cytosol	76.15	76.71
CDY50090	Canola	cytosol	78.53	75.09
Bra038259.1-P	Field mustard	cytosol	78.35	74.91
PGSC0003DMT400025666	Potato	cytosol	2.2	7.41

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.268.20	EntrezGene:102601806	Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil
InterPro:Dynamin_SF	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	InterPro:EHD_N	InterPro:EH_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005515	GO:GO:0005525	InterPro:G_DYNAMIN_dom
InterPro:IPR000261	InterPro:IPR002048	InterPro:IPR030381	UniProt:M1C120	InterPro:P-loop_NTPase	PFAM:PF00350
PFAM:PF12763	PFAM:PF16880	EnsemblPlantsGene:PGSC0003DMG400022303	PGSC:PGSC0003DMG400022303	EnsemblPlants:PGSC0003DMT400057437	PFscan:PS50031
PFscan:PS50222	PFscan:PS51718	PANTHER:PTHR11216	PANTHER:PTHR11216:SF114	SMART:SM00027	SUPFAM:SSF47473
SUPFAM:SSF52540	UniParc:UPI0002960084	RefSeq:XP_006346193.1	SEG:seg	:	:

Description

Calcium-binding EF hand family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022303]

Coordinates

chr7:+:55090597..55096029

Molecular Weight (calculated)

61331.7 Da

IEP (calculated)

7.190

GRAVY (calculated)

-0.337

Length

545 amino acids

Sequence
(BLAST)

001: MEFDTNPINR CSKEHEKIYQ QWFNFADSDG DGRLTGGDAT KFFAMSSLPR PELKQVWAIA DSKRQGFLSF RDFVVGMQLV ALAQAGHAVT SDLLNADVDF
101: ENLPPPAMEG LDVLLAKKKL MPKSEQDQNG SAPVPAAPTT SWFSSSKSSK KISLTSVTSI VDGLKKLYIQ KLKPLEVAYH FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKM SYPGAHIGPE PTTDRFVVVM NGPDERSIPG NTIAVQADMP FSGLTTFGTA FLSKFECSQM AHPLLEHFTL VDTPGVLSGE
301: KQRTQRSYDF TGVTSWFAAK CDLILLLFDP HKLDISDEFK RVIASLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVAR VYIGSFNDKP
401: MREAAAGPLG KELFEKEQDD LLTDLKNIPK KACDRRINEF VKRARAAKIH AYIISHLRKE MPAMIGKAKT QQRLIDELEN EFGKVQREFH LPAGDFPNVE
501: HFREVLGGYS FDRFEKLKPK MIQDVDDMLG YDIPELLKNF RNPYD

Best Arabidopsis Sequence Match ( AT3G20290.3 )
(BLAST)

001: MEIESVAAGS CSKENQMIYK EWFEFSDSDG DGRITGNDAI KFFTMSNLPR PELKQIWAIA DSKRQGYLGF KEFIVAMQLV SLAQTGHEIS HEVLISDVDF
101: KNINPPTMEG LGVLMAKKKH SSKSSDPNMN GSPAADTSLT AHWFSSKSSK KISLSSVTSI VDGLKRLYIQ KLKPLEVAYR FNDFVSPLLT NSDFDAKPMV
201: MLLGQYSTGK TTFIKHLLKS TYPGAHIGPE PTTDRFVVVM SGPDERSIPG NTVAVQADMP FSGLTTFGTA FLSKFECSQM PHPLLEHVTF VDTPGVLSGE
301: KQRTQRAYDF TGVTSWFASK CDLILLLFDP HKLDVSDEFK RVISSLRGHD DKIRVVLNKA DQVDTQQLMR VYGALMWSLG KVLNTPEVSR VYIGSFSDKP
401: INEAATGPIG RELFEKEQDD LLADLKDIPK KACDRRINEF VKRARAAKIH AYIISHLKKE MPAIMGKAKA QQKLIDNLED EFGKVQREHH LPKGDFPNVD
501: HFREVLSGYN IDKFEKLKPK MLQTVDDMLG YDIPELLKNF KNPYD

Arabidopsis Description

EHD1EHD1 [Source:UniProtKB/TrEMBL;Acc:A0A178VAZ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.