Factsheet for PGSC0003DMT400025666

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001702
PGSC0003DMT400020654
PGSC0003DMT400025529
PGSC0003DMT400029685
PGSC0003DMT400042222
PGSC0003DMT400046936
PGSC0003DMT400057449
PGSC0003DMT400060245
PGSC0003DMT400071541
PGSC0003DMT400071652
PGSC0003DMT400072569
PGSC0003DMT400073364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20760.1	PGSC0003DMT400001702	AT1G15370.1	24529374
AT1G20760.1	PGSC0003DMT400073364	AT1G15370.1	24529374
AT1G20760.1	PGSC0003DMT400025529	AT1G47830.1	24529374
AT1G20760.1	PGSC0003DMT400060245	AT3G06810.1	24529374
AT1G20760.1	PGSC0003DMT400071541	AT3G06810.1	24529374
AT1G20760.1	PGSC0003DMT400042222	AT3G11630.1	24529374
AT1G20760.1	PGSC0003DMT400072569	AT3G11630.1	24529374
AT1G20760.1	PGSC0003DMT400046936	AT5G24710.1	24529374
AT1G20760.1	PGSC0003DMT400020654	AT5G43060.1	24529374
AT1G20760.1	PGSC0003DMT400057449	AT5G55070.1	24529374
AT1G20760.1	PGSC0003DMT400071652	AT5G55070.1	24529374
AT1G20760.1	PGSC0003DMT400029685	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g082530.1.1	Tomato	nucleus	15.43	25.77
VIT_18s0122g01080.t01	Wine grape	cytosol	55.56	8.95
Bra012247.1-P	Field mustard	cytosol	50.62	8.2
Bra025842.1-P	Field mustard	cytosol	50.62	8.18
AT1G20760.1	Thale cress	cytosol	51.23	8.15
CDY31869	Canola	cytosol	49.38	8.07
CDY33644	Canola	cytosol	46.3	7.55
KRH60909	Soybean	endoplasmic reticulum	49.38	7.53
KRH51589	Soybean	endoplasmic reticulum	50.0	7.53
CDY66337	Canola	cytosol	45.06	7.37
CDX96625	Canola	cytosol	44.44	7.35
CDY29508	Canola	cytosol	44.44	7.25
CDY01356	Canola	cytosol	43.83	7.24
GSMUA_Achr5P19150_001	Banana	endoplasmic reticulum	40.74	6.97
GSMUA_Achr4P11750_001	Banana	cytosol	45.68	6.9
GSMUA_Achr8P13420_001	Banana	cytosol	40.12	6.83
Bra016455.1-P	Field mustard	nucleus, plastid	44.44	6.34
Os03t0130500-01	Rice	plasma membrane	38.89	5.9
TraesCS5A01G497000.1	Wheat	cytosol	38.27	5.72
TraesCS4B01G324500.1	Wheat	cytosol	37.65	5.66
EER92924	Sorghum	cytosol	36.42	5.65
TraesCS4D01G321600.1	Wheat	cytosol	37.65	5.6
HORVU4Hr1G082280.2	Barley	cytosol	37.65	5.39
Zm00001d014862_P002	Maize	cytosol	38.27	5.12
EER89004	Sorghum	cytosol	37.65	4.98
HORVU7Hr1G121230.4	Barley	cytosol	38.89	4.86
TraesCS7B01G476800.3	Wheat	cytosol	38.89	4.85
Zm00001d037125_P009	Maize	cytosol	35.8	4.8
TraesCS7D01G539600.2	Wheat	cytosol	38.27	4.8
TraesCS7A01G553100.1	Wheat	cytosol	38.27	4.79
PGSC0003DMT400034517	Potato	cytosol	4.94	2.79
PGSC0003DMT400057437	Potato	cytosol	7.41	2.2
Zm00001d048338_P035	Maize	cytosol	14.2	2.12
PGSC0003DMT400033476	Potato	cytosol	6.17	1.83
Zm00001d027503_P036	Maize	cytosol	11.11	1.7
PGSC0003DMT400037353	Potato	cytosol	5.56	1.66
Os06t0728600-00	Rice	plasma membrane	3.7	0.67

Protein Annotations

EnsemblPlants:PGSC0003DMT400025666	EnsemblPlantsGene:PGSC0003DMG400009911	PANTHER:PTHR11216	PANTHER:PTHR11216:SF116	PGSC:PGSC0003DMG400009911	SEG:seg
UniParc:UPI000295D27E	UniProt:M1ALT6	MapMan:35.2	:	:	:

Description

Calcium ion binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009911]

Coordinates

chr4:+:71775895..71776971

Molecular Weight (calculated)

17815.9 Da

IEP (calculated)

5.586

GRAVY (calculated)

-0.872

Length

162 amino acids

Sequence
(BLAST)

001: MLVCSVAESP CTLTNNILQE SDHVKHGEKH FFDSTDFGAS PTRTESPGAE SRYQKNSPFT FEDSVPGSPL SRAGTSPRYS VGSKDPFFDS FSRYDSFSTN
101: DRASSPRKET LTRFDSISSA SGFDHSRGYS FDDADPFGST GPFKVSSESQ NTKKSSDHWS SF

Best Arabidopsis Sequence Match ( AT1G21630.4 )
(BLAST)

0001: MAAPRPTGGQ DLFDTYFRRA DLDGDGHISG AEAVAFFQGS NLPKHVLAQV WSYADSKKAG YLGRAEFYNA LKLVTVAQSR RELTAEIVKA AIYSPASANI
0101: PAPKINLAAT PSPQPRGVLP ATQAQGVTSM PSVAAGVRGP HMGGTVSTSN QQVVPGQQNQ FTGIPPSQTQ QNFQSPGMPA GGTNAPRPAN QPMPSDWLSG
0201: RSVGPSGNVN SQIPSSQSTY GLTAPNSTAN HITKPHITPA VTSSTTTRPQ ESAPVHNPQE SSATFGSRVS NVPSNQLVPK DPKELAASGN GFTSDSLFGD
0301: VFSVTSTQPK QHPTGSASTT GISSVTTGTV AGPEITQSVV RQSSIPQQGS LSQHAVGVQT QLTGNSGQPY TSSGAASGPP GSTVGVGISA TSQLAQRPPH
0401: PHSQPQPRPQ GQSQPPWPKM TPADVQKYTK VFVQVDTDRD GKITGNQARN LFLSWRLPRD ALKQVWDLSD QDNDSMLSLR EFCIAVYLME RYREGRPLPP
0501: VFPSSIIHSE SMFTSPGQSV APHGNASWGH PQGFQQQPHP GGLRPPAGPK GKPPRPVPLS PSDGMVQPTQ PKRKMPVLEK PLVDQLSKEE QDSLNTKFEE
0601: ATAVDKKFSF FAFSIRRYLL PLPYGIYMKY LWICVAIVDE LEKEIADSKQ KIDFFRAKMQ ELVLYKSRCD NRYNEIAERV LGDKRELESL AKKYEEKYKK
0701: SGNVGSKLTI EEATFRDIQE KKMELYQAIV KFEEGKLDDS IVKRTEHIQS GLEELIKNLN ERCKQYGVRG KPTSLVELPF GWQPGIQEGA ADWDEDWDKL
0801: EDEGFTFVKE LTLDIQNVIA PPKEKSSAWR KEVDVSSKEG EDVSFSDADS KTGKKQSSGE EDSEQSEGKT SDVDARDKNG SLDDSKVRKG IEADSSPRTK
0901: DTRSENGHDD GESTASAGKT VNYDSHDETD SVSSVNPDNG KDKDHGKYDS GFGFGFGFDD FSIKPIKTGS TISNDFLPPK LSIFADSVPS PPANASDVSP
1001: TKPSLFADSV PSTPATNNAS YPGQKSFFDD SVPSTPAYPG NLFAEKKSYF DDSVPSTPAY STSDFGGKPF ASETPRSDNL FPGRSPFMFD SVPSTPAAHD
1101: DFSNNSFSRF DSFNSNNNDA FSLSRTDSMR STSEPDPFAS RFDSFNYQRY DSFNAQSYDS SSNNNASETP KASLTRFDSI GSTRDSDYSH GFGFDDHDPF
1201: GSTGPFKTTT TTAETPRSSD NWNAF

Arabidopsis Description

Calcium-binding EF hand family protein [Source:UniProtKB/TrEMBL;Acc:F4HY32]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.