Factsheet for PGSC0003DMT400042222

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400042222
PGSC0003DMT400060907
PGSC0003DMT400070103
PGSC0003DMT400070106
PGSC0003DMT400072569

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11630.1	PGSC0003DMT400060907	AT2G41680.1	25448674
AT3G11630.1	PGSC0003DMT400070103	AT2G41680.1	25448674
AT3G11630.1	PGSC0003DMT400070106	AT2G41680.1	25448674
AT5G06290.1	PGSC0003DMT400060907	AT2G41680.1	25448674
AT5G06290.1	PGSC0003DMT400070103	AT2G41680.1	25448674
AT5G06290.1	PGSC0003DMT400070106	AT2G41680.1	25448674
AT5G06290.1	PGSC0003DMT400042222	AT3G11630.1	21798944
AT5G06290.1	PGSC0003DMT400072569	AT3G11630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g007740.2.1	Tomato	plastid	85.29	86.89
CDY67317	Canola	endoplasmic reticulum	49.63	85.99
KRH32817	Soybean	nucleus, plastid	73.16	77.13
PGSC0003DMT400072569	Potato	cytosol, extracellular, plastid	75.37	76.78
CDY67795	Canola	cytosol	68.01	75.2
Os02t0537700-01	Rice	extracellular	71.69	74.71
KRH72215	Soybean	nucleus	70.96	74.23
TraesCS2B01G313700.1	Wheat	golgi, plastid	71.32	74.05
CDY01041	Canola	plastid	70.22	73.46
HORVU2Hr1G073760.2	Barley	plastid	70.59	73.28
TraesCS2A01G297500.1	Wheat	plastid	69.49	73.26
TraesCS2D01G295500.2	Wheat	plastid	69.49	73.26
Bra009181.1-P	Field mustard	plastid	72.06	72.86
EES06920	Sorghum	plastid	69.12	72.31
CDX73860	Canola	plastid	70.96	72.01
Zm00001d050666_P001	Maize	plastid	68.75	71.92
Zm00001d016736_P001	Maize	extracellular, mitochondrion, plastid	68.75	71.92
AT3G11630.1	Thale cress	plastid	69.85	71.43
CDY08508	Canola	plastid	68.38	71.26
Bra034824.1-P	Field mustard	plastid	68.01	70.88
VIT_08s0007g02490.t01	Wine grape	plastid	70.96	70.7
Bra038667.1-P	Field mustard	plastid	58.09	70.22
AT5G06290.1	Thale cress	plastid	70.22	69.96
CDY56598	Canola	cytosol	69.12	67.87
CDX73858	Canola	plastid	71.32	64.88
Bra001415.1-P	Field mustard	plastid	68.75	60.91
KRG96244	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.43	58.64
KRH04627	Soybean	extracellular	21.32	46.77
GSMUA_Achr3P02980_001	Banana	cytosol	41.18	45.71
PGSC0003DMT400071283	Potato	cytosol	22.06	27.52

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.5.3.1	EntrezGene:102583732	Gene3D:3.40.30.10	InterPro:AhpC/TSA	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016209	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0051920	GO:GO:0055114
GO:GO:0098869	InterPro:IPR013766	UniProt:M1BCP7	PFAM:PF00578	PFAM:PF10417	EnsemblPlantsGene:PGSC0003DMG400016387
PGSC:PGSC0003DMG400016387	EnsemblPlants:PGSC0003DMT400042222	PIRSF:PIRSF000239	PFscan:PS51352	PANTHER:PTHR10681	PANTHER:PTHR10681:SF140
InterPro:Peroxiredoxin_AhpC-typ	InterPro:Peroxiredoxin_C	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000295F4A7
RefSeq:XP_006348484.1	:	:	:	:	:

Description

Thioredoxin peroxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400016387]

Coordinates

chr1:-:3296133..3300692

Molecular Weight (calculated)

29979.7 Da

IEP (calculated)

7.915

GRAVY (calculated)

-0.129

Length

272 amino acids

Sequence
(BLAST)

001: MACSVTSTAL LSSSNPRVYA SAAALPKLSS FSQSTIVPSS SSFNGLRNCN TLVSRIPRSI SSRTNKSRSF VVRASSEVPL VGNKAPDFEA EAVFDQEFIK
101: VKLSEYIGKK YVILFFYPLD FTFVCPTEIT AFSDRYEEFK NVNTEILGVS IDSVFSHLAW VQTERKTGGL GDLNYPLISD MTKSISKSYN VLIPDQGIAL
201: RGLFIIDKEG VIQHSTINNL AIGRSVDETL RTLQALQYVQ ENPDEVCPAG WKPGDKSMKP DPKGSKEYFA SI

Best Arabidopsis Sequence Match ( AT5G06290.1 )
(BLAST)

001: MSMASIASSS STTLLSSSRV LLPSKSSLLS PTVSFPRIIP SSSASSSSLC SGFSSLGSLT TNRSASRRNF AVKAQADDLP LVGNKAPDFE AEAVFDQEFI
101: KVKLSEYIGK KYVILFFYPL DFTFVCPTEI TAFSDRYEEF EKLNTEVLGV SVDSVFSHLA WVQTDRKSGG LGDLNYPLVS DITKSISKSF GVLIPDQGIA
201: LRGLFIIDKE GVIQHSTINN LGIGRSVDET MRTLQALQYV QENPDEVCPA GWKPGEKSMK PDPKLSKEYF SAI

Arabidopsis Description

2-Cys Prx B2-Cys peroxiredoxin BAS1-like, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5R8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.