CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79923
CDY22534
CDY23835
CDY35405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11630.1	CDX79923	AT2G41680.1	25448674
AT3G11630.1	CDY22534	AT2G41680.1	25448674
AT3G11630.1	CDY23835	AT2G41680.1	25448674
AT3G11630.1	CDY35405	AT2G41680.1	25448674

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034824.1-P	Field mustard	plastid	98.08	98.08
CDY01041	Canola	plastid	93.87	94.23
CDY67317	Canola	endoplasmic reticulum	55.17	91.72
GSMUA_Achr3P02970_001	Banana	cytosol	14.18	86.05
AT3G11630.1	Thale cress	plastid	83.91	82.33
CDY67795	Canola	cytosol	77.39	82.11
CDX73860	Canola	plastid	81.99	79.85
CDY56598	Canola	cytosol	80.84	76.17
Os02t0537700-01	Rice	extracellular	73.95	73.95
Zm00001d050666_P001	Maize	plastid	73.18	73.46
TraesCS2A01G297500.1	Wheat	plastid	72.03	72.87
TraesCS2D01G295500.2	Wheat	plastid	72.03	72.87
EES06920	Sorghum	plastid	72.03	72.31
VIT_08s0007g02490.t01	Wine grape	plastid	75.48	72.16
Zm00001d016736_P001	Maize	extracellular, mitochondrion, plastid	71.65	71.92
TraesCS2B01G313700.1	Wheat	golgi, plastid	72.03	71.76
HORVU2Hr1G073760.2	Barley	plastid	71.65	71.37
CDX73858	Canola	plastid	81.61	71.24
Solyc01g007740.2.1	Tomato	plastid	72.03	70.41
PGSC0003DMT400072569	Potato	cytosol, extracellular, plastid	71.65	70.04
Solyc10g082030.1.1	Tomato	plastid	70.88	69.29
PGSC0003DMT400042222	Potato	plastid	71.26	68.38
KRH67987	Soybean	endoplasmic reticulum	48.66	65.46
CDY13290	Canola	cytosol	9.58	32.47
CDY72143	Canola	cytosol	9.58	19.68
CDY72482	Canola	cytosol	7.66	19.05

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.5.3.1	Gene3D:3.40.30.10	GO:A0A078F9Q1	UniProt:A0A078F9Q1	InterPro:AhpC/TSA
EnsemblPlants:CDY08508	ProteinID:CDY08508	ProteinID:CDY08508.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016209	GO:GO:0016491
GO:GO:0019725	GO:GO:0045454	GO:GO:0051920	GO:GO:0055114	GO:GO:0098869	EnsemblPlantsGene:GSBRNA2T00000282001
InterPro:IPR013766	PFAM:PF00578	PFAM:PF10417	PIRSF:PIRSF000239	PFscan:PS51352	PANTHER:PTHR10681
PANTHER:PTHR10681:SF140	InterPro:Peroxiredoxin_AhpC-typ	InterPro:Peroxiredoxin_C	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
UniParc:UPI0004EE0897	SEG:seg	:	:	:	:

Description

BnaA05g27440DBnaA05g27440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9Q1]

Coordinates

chrLK031986:-:483392..484941

Molecular Weight (calculated)

28726.2 Da

IEP (calculated)

6.282

GRAVY (calculated)

-0.084

Length

261 amino acids

Sequence
(BLAST)

001: MASSVASSTT LISSTRVSPA KSSLPSPSSL SFLRTISSPL RSRFALRSSL SSCSRRSFAV KAQADDLPLV GNKAPDFEAE AVFDQEFIKV KLSEYIGKKY
101: VILFFYPLDF TFVCPTEITA FSDRYAEFEK LNTEVLGVSV DSVFSHLAWV QTDRQSGGLG DLNYPLVSDV TKSISKSFGV LIHDQGIALR GLFIIDKEGV
201: IQHSTINNLG IGRSVDETMR TLQALQYIQE NPDEVCPAGW QPGEKSMKPD PKLSKEYFSA I

Best Arabidopsis Sequence Match ( AT3G11630.1 )
(BLAST)

001: MASVASSTTL ISSPSSRVFP AKSSLSSPSV SFLRTLSSPS ASASLRSGFA RRSSLSSTSR RSFAVKAQAD DLPLVGNKAP DFEAEAVFDQ EFIKVKLSDY
101: IGKKYVILFF YPLDFTFVCP TEITAFSDRH SEFEKLNTEV LGVSVDSVFS HLAWVQTDRK SGGLGDLNYP LISDVTKSIS KSFGVLIHDQ GIALRGLFII
201: DKEGVIQHST INNLGIGRSV DETMRTLQAL QYIQENPDEV CPAGWKPGEK SMKPDPKLSK EYFSAI

Arabidopsis Description

BAS12-Cys peroxiredoxin BAS1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96291]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.