Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
YLoc:cytosol
cytosol: 19562800
msms PMID: 19562800 doi
P Jolivet, C Boulard, A Bellamy, C Larré, M Barre, H Rogniaux, S d'Andréa, T Chardot, N Nesi
NRA, UMR 206, Chimie Biologique, Thiverval-Grignon, France. jolivet@grignon.inra.fr
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY72482 Canola cytosol 76.38 92.38
GSMUA_Achr2P03480_001 Banana cytosol 48.82 57.41
Bra032241.1-P Field mustard cytosol 97.64 53.68
AT1G48130.1 Thale cress cytosol 90.55 53.24
TraesCS2B01G174400.1 Wheat cytosol 74.02 43.12
VIT_05s0020g00600.t01 Wine grape cytosol 73.23 42.47
TraesCS2D01G154300.2 Wheat cytosol, plastid 72.44 42.2
Solyc03g096040.2.1 Tomato extracellular 72.44 42.01
VIT_05s0077g00050.t01 Wine grape cytosol 62.2 41.36
PGSC0003DMT400071283 Potato cytosol 70.08 40.83
KRH42408 Soybean endoplasmic reticulum 68.5 39.91
Os07t0638300-01 Rice plastid 68.5 39.55
EER97619 Sorghum cytosol 68.5 39.19
Zm00001d022278_P001 Maize cytosol 69.29 38.43
Os07t0638400-01 Rice cytosol 64.57 37.27
VIT_05s0020g00590.t01 Wine grape cytosol 46.46 34.91
KRH58527 Soybean cytosol, endoplasmic reticulum, mitochondrion 44.88 32.39
GSMUA_Achr11P... Banana cytosol 62.2 31.6
HORVU2Hr1G026810.1 Barley cytosol 50.39 29.36
CDY67317 Canola endoplasmic reticulum 21.26 17.2
CDY67795 Canola cytosol 21.26 10.98
CDX73860 Canola plastid 21.26 10.07
CDY56598 Canola cytosol 21.26 9.75
CDY01041 Canola plastid 19.68 9.62
CDY08508 Canola plastid 19.68 9.58
CDX73858 Canola plastid 21.26 9.03
CDY13290 Canola cytosol 0.0 0.0
Protein Annotations
KEGG:00480+1.11.1.15MapMan:10.4.3.1Gene3D:3.30.1020.10Gene3D:3.40.30.10GO:A0A078JWW7UniProt:A0A078JWW7
EnsemblPlants:CDY72143ProteinID:CDY72143ProteinID:CDY72143.1GO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0005623GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016209GO:GO:0016491
GO:GO:0019725GO:GO:0045454GO:GO:0051920GO:GO:0055114GO:GO:0098869EnsemblPlantsGene:GSBRNA2T00025211001
PFAM:PF10417PANTHER:PTHR43503PANTHER:PTHR43503:SF4InterPro:Peroxiredoxin_CSUPFAM:SSF52833InterPro:Thioredoxin-like_sf
UniParc:UPI0004EE7DBA:::::
Description
BnaAnng40060DBnaAnng40060D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JWW7]
Coordinates
chrLK049202:-:1717..2259
Molecular Weight (calculated)
13919.9 Da
IEP (calculated)
9.057
GRAVY (calculated)
-0.291
Length
127 amino acids
Sequence
(BLAST)
001: PGSKVTYPII ADPNKEIIPQ LNMVDPIENG PSRALHIVGP DCKIKLSFLY PSTTGRNMDE VLRALDSLLM AAKHKNKIAT PVNWKPDEPV VISPAVSDEE
101: AKKLFPQGFK TAELPSKKGY LRVADVS
Best Arabidopsis Sequence Match ( AT1G48130.1 )
(BLAST)
001: MPGITLGDTV PNLEVETTHD KFKLHDYFAN SWTVLFSHPG DFTPVCTTEL GAMAKYAHEF DKRGVKLLGL SCDDVQSHKD WIKDIEAFNH GSKVNYPIIA
101: DPNKEIIPQL NMIDPIENGP SRALHIVGPD SKIKLSFLYP STTGRNMDEV LRALDSLLMA SKHNNKIATP VNWKPDQPVV ISPAVSDEEA KKMFPQGFKT
201: ADLPSKKGYL RHTEVS
Arabidopsis Description
PER11-Cys peroxiredoxin PER1 [Source:UniProtKB/Swiss-Prot;Acc:O04005]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.