CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79923
CDY22534
CDY23835
CDY35405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11630.1	CDX79923	AT2G41680.1	25448674
AT3G11630.1	CDY22534	AT2G41680.1	25448674
AT3G11630.1	CDY23835	AT2G41680.1	25448674
AT3G11630.1	CDY35405	AT2G41680.1	25448674

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08508	Canola	plastid	94.23	93.87
Bra034824.1-P	Field mustard	plastid	93.08	92.72
CDY67317	Canola	endoplasmic reticulum	55.38	91.72
GSMUA_Achr3P02970_001	Banana	cytosol	14.23	86.05
AT3G11630.1	Thale cress	plastid	87.69	85.71
CDX73860	Canola	plastid	85.77	83.21
CDY67795	Canola	cytosol	77.31	81.71
CDY56598	Canola	cytosol	80.77	75.81
Zm00001d050666_P001	Maize	plastid	74.23	74.23
CDX73858	Canola	plastid	84.62	73.58
EES06920	Sorghum	plastid	73.08	73.08
TraesCS2D01G295500.2	Wheat	plastid	72.31	72.87
TraesCS2A01G297500.1	Wheat	plastid	72.31	72.87
Os02t0537700-01	Rice	extracellular	73.08	72.8
Zm00001d016736_P001	Maize	extracellular, mitochondrion, plastid	72.69	72.69
Solyc01g007740.2.1	Tomato	plastid	74.62	72.66
PGSC0003DMT400072569	Potato	cytosol, extracellular, plastid	73.85	71.91
TraesCS2B01G313700.1	Wheat	golgi, plastid	72.31	71.76
HORVU2Hr1G073760.2	Barley	plastid	71.92	71.37
Solyc10g082030.1.1	Tomato	plastid	73.08	71.16
VIT_08s0007g02490.t01	Wine grape	plastid	74.62	71.06
PGSC0003DMT400042222	Potato	plastid	73.46	70.22
KRH67987	Soybean	endoplasmic reticulum	49.23	65.98
CDY13290	Canola	cytosol	9.62	32.47
CDY72143	Canola	cytosol	9.62	19.68
CDY72482	Canola	cytosol	7.69	19.05

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.5.3.1	Gene3D:3.40.30.10	GO:A0A078EIW9	InterPro:AhpC/TSA	EnsemblPlants:CDY01041
ProteinID:CDY01041	ProteinID:CDY01041.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016209	GO:GO:0016491	GO:GO:0019725
GO:GO:0045454	GO:GO:0051920	GO:GO:0055114	GO:GO:0098869	EnsemblPlantsGene:GSBRNA2T00111075001	InterPro:IPR013766
PFAM:PF00578	PFAM:PF10417	PIRSF:PIRSF000239	PFscan:PS51352	PANTHER:PTHR10681	PANTHER:PTHR10681:SF140
InterPro:Peroxiredoxin_AhpC-typ	InterPro:Peroxiredoxin_C	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0004EF05A3
SEG:seg	:	:	:	:	:

Description

BnaC05g41590D

Coordinates

chrLK031923:+:866282..867870

Molecular Weight (calculated)

28570.0 Da

IEP (calculated)

5.780

GRAVY (calculated)

-0.042

Length

260 amino acids

Sequence
(BLAST)

001: MASVASSTAL ISSTRVSPAK SSLPSPSSLS FLRTISSPLR SGFALRSSLS FCSRRSFAVK AQADDLPLVG NKAPDFEAEA VFDQEFIKVK LSEYIGKKYV
101: ILFFYPLDFT FVCPTEITAF SDRYAEFEKL NTEVLGVSVD SVFSHLAWVQ TDRQSGGLGD LNYPLVSDVT KSISKSFGVL IHDQGIALRG LFIIDKEGVI
201: QHSTINNLGI GRSVDETMRT LQALQYIQEN PDEVCPAGWQ PGEKSMKPDP KLSKEYFSAI

Best Arabidopsis Sequence Match ( AT3G11630.1 )
(BLAST)

001: MASVASSTTL ISSPSSRVFP AKSSLSSPSV SFLRTLSSPS ASASLRSGFA RRSSLSSTSR RSFAVKAQAD DLPLVGNKAP DFEAEAVFDQ EFIKVKLSDY
101: IGKKYVILFF YPLDFTFVCP TEITAFSDRH SEFEKLNTEV LGVSVDSVFS HLAWVQTDRK SGGLGDLNYP LISDVTKSIS KSFGVLIHDQ GIALRGLFII
201: DKEGVIQHST INNLGIGRSV DETMRTLQAL QYIQENPDEV CPAGWKPGEK SMKPDPKLSK EYFSAI

Arabidopsis Description

BAS12-Cys peroxiredoxin BAS1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96291]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.