Factsheet for GSMUA_Achr3P02970_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr3P02970_001
GSMUA_Achr8P09560_001
GSMUA_Achr8P09570_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11630.1	GSMUA_Achr11P...	AT2G41680.1	25448674
AT3G11630.1	GSMUA_Achr8P09560_001	AT2G41680.1	25448674
AT3G11630.1	GSMUA_Achr8P09570_001	AT2G41680.1	25448674
AT5G06290.1	GSMUA_Achr11P...	AT2G41680.1	25448674
AT5G06290.1	GSMUA_Achr8P09560_001	AT2G41680.1	25448674
AT5G06290.1	GSMUA_Achr8P09570_001	AT2G41680.1	25448674
AT5G06290.1	GSMUA_Achr3P02970_001	AT3G11630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P20430_001	Banana	cytosol	55.81	55.81
CDY67317	Canola	endoplasmic reticulum	90.7	24.84
KRH67987	Soybean	endoplasmic reticulum	83.72	18.56
Bra038667.1-P	Field mustard	plastid	88.37	16.89
CDY67795	Canola	cytosol	90.7	15.85
GSMUA_Achr6P18200_001	Banana	plastid	90.7	14.61
GSMUA_Achr8P16140_001	Banana	plastid	90.7	14.5
Bra009181.1-P	Field mustard	plastid	90.7	14.5
AT5G06290.1	Thale cress	plastid	90.7	14.29
AT3G11630.1	Thale cress	plastid	88.37	14.29
CDY01041	Canola	plastid	86.05	14.23
CDX73860	Canola	plastid	88.37	14.18
CDY08508	Canola	plastid	86.05	14.18
Bra034824.1-P	Field mustard	plastid	86.05	14.18
CDY56598	Canola	cytosol	88.37	13.72
CDX73858	Canola	plastid	88.37	12.71
Bra001415.1-P	Field mustard	plastid	88.37	12.38
GSMUA_Achr2P03480_001	Banana	cytosol	27.91	11.11
GSMUA_Achr11P...	Banana	cytosol	25.58	4.4
GSMUA_Achr3P02980_001	Banana	cytosol	4.65	0.82

Protein Annotations

KEGG:00480+1.11.1.15	Gene3D:3.40.30.10	MapMan:50.1.11	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0051920	GO:GO:0055114	GO:GO:0098869	EnsemblPlantsGene:GSMUA_Achr3G02970_001
EnsemblPlants:GSMUA_Achr3P02970_001	EnsemblPlants:GSMUA_Achr3T02970_001	UniProt:M0SBB5	PFAM:PF10417	PANTHER:PTHR10681	PANTHER:PTHR10681:SF140
InterPro:Peroxiredoxin_C	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0002967F93	:	:

Description

2-Cys peroxiredoxin BAS1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr3G02970_001]

Coordinates

chr3:-:1947903..1948648

Molecular Weight (calculated)

4898.9 Da

IEP (calculated)

4.773

GRAVY (calculated)

-0.598

Length

43 amino acids

Sequence
(BLAST)

1: MRTLQSLQYV QENPDEVCPA GWKPGEMSMK PDPKLSKEFF AAI

Best Arabidopsis Sequence Match ( AT5G06290.1 )
(BLAST)

001: MSMASIASSS STTLLSSSRV LLPSKSSLLS PTVSFPRIIP SSSASSSSLC SGFSSLGSLT TNRSASRRNF AVKAQADDLP LVGNKAPDFE AEAVFDQEFI
101: KVKLSEYIGK KYVILFFYPL DFTFVCPTEI TAFSDRYEEF EKLNTEVLGV SVDSVFSHLA WVQTDRKSGG LGDLNYPLVS DITKSISKSF GVLIPDQGIA
201: LRGLFIIDKE GVIQHSTINN LGIGRSVDET MRTLQALQYV QENPDEVCPA GWKPGEKSMK PDPKLSKEYF SAI

Arabidopsis Description

2-Cys Prx B2-Cys peroxiredoxin BAS1-like, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5R8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.