Factsheet for GSMUA_Achr8P09560_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P13230_001
GSMUA_Achr3P08100_001
GSMUA_Achr3P31620_001
GSMUA_Achr4P32570_001
GSMUA_Achr5P24690_001
GSMUA_Achr6P24690_001
GSMUA_Achr6P25720_001
GSMUA_Achr7P01840_001
GSMUA_Achr7P07540_001
GSMUA_Achr8P09560_001
GSMUA_Achr8P09570_001
GSMUA_Achr9P18700_001
GSMUA_Achr9P18710_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41680.1	GSMUA_Achr3P08100_001	AT1G02870.1	21798944
AT2G41680.1	GSMUA_Achr4P32570_001	AT1G49850.1	21798944
AT2G41680.1	GSMUA_Achr6P24690_001	AT1G49850.1	21798944
AT2G41680.1	GSMUA_Achr1P13230_001	AT1G76760.1	21798944
AT2G41680.1	GSMUA_Achr6P25720_001	AT1G76760.1	21798944
AT2G41680.1	GSMUA_Achr11P...	AT2G41680.1	21798944
AT2G41680.1	GSMUA_Achr8P09560_001	AT2G41680.1	21798944
AT2G41680.1	GSMUA_Achr8P09570_001	AT2G41680.1	21798944
AT2G41680.1	GSMUA_Achr5P24690_001	AT3G04860.1	21798944
AT2G41680.1	GSMUA_Achr7P01840_001	AT3G04860.1	21798944
AT2G41680.1	GSMUA_Achr7P07540_001	AT3G04860.1	21798944
AT2G41680.1	GSMUA_Achr3P31620_001	AT4G10930.1	21798944
AT2G41680.1	GSMUA_Achr9P18700_001	AT5G40440.1	21798944
AT2G41680.1	GSMUA_Achr9P18710_001	AT5G40440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070106	Potato	cytosol	81.82	81.82
HORVU2Hr1G023170.1	Barley	cytosol	82.68	39.63
Os07t0657900-02	Rice	plastid	84.42	37.86
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	91.34	37.28
VIT_08s0007g08760.t01	Wine grape	plastid	85.28	37.24
Bra000234.1-P	Field mustard	plastid	82.25	37.18
CDY35405	Canola	plastid	82.25	37.18
KRH33290	Soybean	nucleus	83.12	36.99
TraesCS2B01G154700.1	Wheat	plastid	83.12	36.92
KXG36845	Sorghum	plastid	83.55	36.83
CDY22534	Canola	plastid	81.39	36.79
KRH72015	Soybean	nucleus	83.12	36.78
Bra004639.1-P	Field mustard	plastid	82.68	36.66
AT2G41680.1	Thale cress	plastid	82.68	36.11
CDX79923	Canola	mitochondrion, plastid	82.68	35.77
Zm00001d022381_P016	Maize	plastid	84.85	35.44
Solyc10g080080.1.1	Tomato	plastid	83.12	35.36
Solyc04g016010.2.1	Tomato	nucleus	81.82	35.2
CDY23835	Canola	plastid	82.68	35.17
PGSC0003DMT400060907	Potato	plastid	82.25	34.99
TraesCS2A01G132200.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	83.12	32.16
GSMUA_Achr9P27590_001	Banana	mitochondrion	25.11	16.38
GSMUA_Achr8P09570_001	Banana	cytosol	2.16	2.86
PGSC0003DMT400070103	Potato	plastid	0.0	0.0

Protein Annotations

MapMan:10.5.2	Gene3D:3.40.30.10	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr8G09560_001	EnsemblPlants:GSMUA_Achr8P09560_001
EnsemblPlants:GSMUA_Achr8T09560_001	InterPro:IPR013766	InterPro:IPR036188	UniProt:M0TP09	PFAM:PF00085	PFAM:PF07992
PRINTS:PR00368	PRINTS:PR00469	PFscan:PS51352	PANTHER:PTHR42863	PANTHER:PTHR42863:SF1	InterPro:Pyridine_nuc-diS_OxRdtase_2
SUPFAM:SSF51905	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0002967F8E	SEG:seg

Description

Thioredoxin reductase NTRC [Source:GMGC_GENE;Acc:GSMUA_Achr8G09560_001]

Coordinates

chr8:-:6711863..6717221

Molecular Weight (calculated)

25631.9 Da

IEP (calculated)

5.630

GRAVY (calculated)

-0.188

Length

231 amino acids

Sequence
(BLAST)

001: MSGVLVKRVD TGEESVLELK GLFYGIGHTP NSHLLEGQIE LDSSGYIIVK EGTSKTSVEG VFAAGDVQDH EWRQAVTAAG SGCVAALSVE RYLVANNLLV
101: EFHQPVTEVV KKEVTDKDAQ MGFDITLTKH KGQYALRKLY HESPRLLCIL YTAPTCGPCR TLKPILSKVI DDYNQNVHFV EIDIEEDPEI AEAAGIMGTP
201: CVQFFKNKEM LRTLSGVKMK KEYREIIEAN K

Best Arabidopsis Sequence Match ( AT2G41680.1 )
(BLAST)

001: MAASPKIGIG IASVSSPHRV SAASSALSPP PHLFFLTTTT TTRHGGSYLL RQPTRTRSSD SLRLRVSATA NSPSSSSSGG EIIENVVIIG SGPAGYTAAI
101: YAARANLKPV VFEGYQMGGV PGGQLMTTTE VENFPGFPDG ITGPDLMEKM RKQAERWGAE LYPEDVESLS VTTAPFTVQT SERKVKCHSI IYATGATARR
201: LRLPREEEFW SRGISACAIC DGASPLFKGQ VLAVVGGGDT ATEEALYLTK YARHVHLLVR RDQLRASKAM QDRVINNPNI TVHYNTETVD VLSNTKGQMS
301: GILLRRLDTG EETELEAKGL FYGIGHSPNS QLLEGQVELD SSGYVLVREG TSNTSVEGVF AAGDVQDHEW RQAVTAAGSG CIAALSAERY LTSNNLLVEF
401: HQPQTEEAKK EFTQRDVQEK FDITLTKHKG QYALRKLYHE SPRVILVLYT SPTCGPCRTL KPILNKVVDE YNHDVHFVEI DIEEDQEIAE AAGIMGTPCV
501: QFFKNKEMLR TISGVKMKKE YREFIEANK

Arabidopsis Description

NTRCThioredoxin reductase [Source:UniProtKB/TrEMBL;Acc:A0A178VZE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.