Factsheet for Solyc04g016010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g097790.2.1
Solyc01g107290.2.1
Solyc03g019850.2.1
Solyc04g016010.2.1
Solyc04g071560.2.1
Solyc09g075030.2.1
Solyc10g080080.1.1
Solyc12g055910.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41680.1	Solyc09g075030.2.1	AT1G02870.1	21798944
AT2G41680.1	Solyc01g107290.2.1	AT1G49850.1	21798944
AT2G41680.1	Solyc04g071560.2.1	AT1G76760.1	21798944
AT2G41680.1	Solyc04g016010.2.1	AT2G41680.1	21798944
AT2G41680.1	Solyc10g080080.1.1	AT2G41680.1	21798944
AT2G41680.1	Solyc01g097790.2.1	AT3G04860.1	21798944
AT2G41680.1	Solyc12g055910.1.1	AT4G10930.1	21798944
AT2G41680.1	Solyc03g019850.2.1	AT5G40440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070106	Potato	cytosol	41.53	96.54
PGSC0003DMT400070103	Potato	plastid	34.82	86.98
GSMUA_Achr8P09560_001	Banana	cytosol	35.2	81.82
Solyc10g080080.1.1	Tomato	plastid	75.23	74.4
HORVU2Hr1G023170.1	Barley	cytosol	64.99	72.41
Bra000234.1-P	Field mustard	plastid	66.48	69.86
CDY35405	Canola	plastid	66.48	69.86
CDY22534	Canola	plastid	66.29	69.67
KRH33290	Soybean	nucleus	66.67	68.98
KRH72015	Soybean	nucleus	66.85	68.77
Bra004639.1-P	Field mustard	plastid	66.48	68.52
VIT_08s0007g08760.t01	Wine grape	plastid	67.41	68.43
Os07t0657900-02	Rice	plastid	64.99	67.77
TraesCS2B01G154700.1	Wheat	plastid	65.36	67.5
AT2G41680.1	Thale cress	plastid	66.29	67.3
CDX79923	Canola	mitochondrion, plastid	66.48	66.85
KXG36845	Sorghum	plastid	65.18	66.79
GSMUA_Achr8P09570_001	Banana	cytosol	21.42	65.71
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	69.09	65.55
CDY23835	Canola	plastid	66.11	65.38
Zm00001d022381_P016	Maize	plastid	64.8	62.93
TraesCS2A01G132200.1	Wheat	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	64.99	58.46
Solyc03g032000.2.1	Tomato	cytosol, extracellular	27.75	45.43
Solyc02g082250.2.1	Tomato	mitochondrion	27.93	40.87

Protein Annotations

MapMan:10.5.2	Gene3D:3.40.30.10	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	InterPro:IPR036188
UniProt:K4BQA2	PFAM:PF00085	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00469	ScanProsite:PS00573
PFscan:PS51352	PANTHER:PTHR42863	PANTHER:PTHR42863:SF1	InterPro:Pyr_nucl-diS_OxRdtase_2_AS	InterPro:Pyridine_nuc-diS_OxRdtase_2	SUPFAM:SSF51905
SUPFAM:SSF52833	EnsemblPlantsGene:Solyc04g016010.2	EnsemblPlants:Solyc04g016010.2.1	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0002766F74
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:6613543..6624763

Molecular Weight (calculated)

58187.0 Da

IEP (calculated)

5.301

GRAVY (calculated)

-0.205

Length

537 amino acids

Sequence
(BLAST)

001: MATTIPNING AVVAGIGTGT EIYGNATRRS AFSFMPAPST LSTALRIPTG SLLINSGPSR AGRVDSFLTG FRLSSSSIRS SAAESAGEQA EADSSAQGIE
101: NLVIVGSGPA GYTAAIYAAR ANLKPVVFEG FQVGGVPGGQ LMTTTEVENF PGFPDGITGP DLMDRMRRQA ERWGGELFQE DVEFIDVKNT PFTVRSTERK
201: IKCHSLIIAT GARAQRLRLP REDEFWSRGI SACAICDGAS PLFKGQVLAV VGGGDTATEE EGPTKGIIGN ARQVDYRECF RVFNSSNITV HFNTETVDVV
301: SNSKGQISGI LIRTVDTGEE SVLEAKGLFY GIGHSPNSKL LEGQVELDSA GYILVKESTA KTSVEGVFAA GDVQDHEWRQ AVTAAGSGCL AALSVERYLT
401: SKNLLVEFHQ PQAEDDKKEL MEKDVQESFD ITYVKHKGQY ALRKLYHESP RLLCVLYTSP SCGPCRTLKP ILSKVIDEFD QHVHFVEIDI TEDPEIAEAA
501: EIMGTPCVQF FKNKEMLRTI SGVKMKREYR ELIGANK

Best Arabidopsis Sequence Match ( AT2G41680.1 )
(BLAST)

001: MAASPKIGIG IASVSSPHRV SAASSALSPP PHLFFLTTTT TTRHGGSYLL RQPTRTRSSD SLRLRVSATA NSPSSSSSGG EIIENVVIIG SGPAGYTAAI
101: YAARANLKPV VFEGYQMGGV PGGQLMTTTE VENFPGFPDG ITGPDLMEKM RKQAERWGAE LYPEDVESLS VTTAPFTVQT SERKVKCHSI IYATGATARR
201: LRLPREEEFW SRGISACAIC DGASPLFKGQ VLAVVGGGDT ATEEALYLTK YARHVHLLVR RDQLRASKAM QDRVINNPNI TVHYNTETVD VLSNTKGQMS
301: GILLRRLDTG EETELEAKGL FYGIGHSPNS QLLEGQVELD SSGYVLVREG TSNTSVEGVF AAGDVQDHEW RQAVTAAGSG CIAALSAERY LTSNNLLVEF
401: HQPQTEEAKK EFTQRDVQEK FDITLTKHKG QYALRKLYHE SPRVILVLYT SPTCGPCRTL KPILNKVVDE YNHDVHFVEI DIEEDQEIAE AAGIMGTPCV
501: QFFKNKEMLR TISGVKMKKE YREFIEANK

Arabidopsis Description

NTRCThioredoxin reductase [Source:UniProtKB/TrEMBL;Acc:A0A178VZE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.