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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g084870.2.1
Solyc04g080730.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G40440.1 Solyc04g080730.2.1 AT1G59580.1 19513235
AT5G40440.1 Solyc02g084870.2.1 AT2G18170.1 19513235
AT5G40440.1 Solyc02g084870.2.1 AT4G36450.1 19513235
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400039329 Potato cytosol 99.22 99.22
KRH56582 Soybean cytosol 82.33 81.85
VIT_14s0066g00670.t01 Wine grape cytosol 81.75 81.27
KRG93261 Soybean cytosol 82.52 80.8
GSMUA_Achr9P18710_001 Banana cytosol 44.47 77.36
CDY42585 Canola cytosol 75.92 75.48
CDY50119 Canola cytosol 75.92 75.48
Bra025576.1-P Field mustard cytosol 75.73 75.29
AT5G40440.1 Thale cress cytosol 75.92 75.19
Os06t0473200-02 Rice cytosol 48.35 70.14
HORVU5Hr1G125270.1 Barley cytosol 49.32 67.91
KXG24971 Sorghum cytosol 68.74 67.69
Zm00001d013510_P002 Maize cytosol 40.97 65.94
TraesCS5D01G549600.1 Wheat cytosol 66.02 65.01
HORVU5Hr1G125290.3 Barley cytosol 65.63 64.63
TraesCS5A01G122700.4 Wheat cytosol 36.5 62.88
GSMUA_Achr9P18700_001 Banana cytosol 27.57 62.01
Zm00001d041092_P001 Maize plasma membrane 67.77 58.85
TraesCS5D01G130900.2 Wheat cytosol 56.89 55.81
TraesCS5B01G122600.1 Wheat cytosol 49.51 53.57
TraesCS5B01G565100.3 Wheat cytosol 49.71 48.76
Solyc03g119490.2.1 Tomato cytosol, extracellular 26.41 38.42
Solyc12g009020.1.1 Tomato cytosol 26.21 37.82
Solyc03g097920.1.1 Tomato cytosol 20.58 31.64
Solyc03g123800.1.1 Tomato nucleus 21.94 31.48
Zm00001d004610_P001 Maize cytosol 6.41 18.44
Solyc06g053730.1.1 Tomato cytosol 17.48 17.27
Solyc07g062940.2.1 Tomato cytosol 20.19 14.53
Solyc02g086790.2.1 Tomato cytosol 18.45 14.5
Solyc06g068590.2.1 Tomato cytosol 17.48 13.78
Solyc03g117790.1.1 Tomato cytosol 18.64 13.75
Solyc08g083040.2.1 Tomato cytosol 18.06 12.79
Solyc08g008550.2.1 Tomato cytosol 17.28 12.5
Solyc05g012130.2.1 Tomato cytosol 19.42 12.24
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.2.1Gene3D:3.10.450.50Gene3D:3.30.200.20GO:GO:0000165GO:GO:0000166
GO:GO:0000187GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0004674GO:GO:0004707
GO:GO:0004708GO:GO:0004871GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0006464GO:GO:0006468GO:GO:0006950
GO:GO:0007049GO:GO:0007154GO:GO:0007165GO:GO:0007346GO:GO:0008150GO:GO:0008152
GO:GO:0009605GO:GO:0009607GO:GO:0009719GO:GO:0009737GO:GO:0009738GO:GO:0009814
GO:GO:0009864GO:GO:0009866GO:GO:0009987GO:GO:0016301GO:GO:0016740GO:GO:0019538
GO:GO:0023014GO:GO:0031098GO:GO:0032147InterPro:IPR000719InterPro:IPR018222UniProt:K4BEV7
InterPro:Kinase-like_dom_sfInterPro:NTF2-like_dom_sfInterPro:Nuclear_transport_factor_2_eukPFAM:PF00069ScanProsite:PS00107ScanProsite:PS00108
PFscan:PS50011PFscan:PS50177PANTHER:PTHR24361PANTHER:PTHR24361:SF487InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BS
SMART:SM00220SUPFAM:SSF54427SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASEnsemblPlantsGene:Solyc03g019850.2EnsemblPlants:Solyc03g019850.2.1
UniParc:UPI00027688DB:::::
Description
No Description!
Coordinates
chr3:-:61330650..61335362
Molecular Weight (calculated)
57503.9 Da
IEP (calculated)
5.583
GRAVY (calculated)
-0.151
Length
515 amino acids
Sequence
(BLAST)
001: MAGLEELKKK LVPLFDADKG FSPTSTSDPF DSYSLSDAGT VNLLSQSYGV YNINELGLQK WPVDDTDHGE KTYRCASHEM RVFGAIGAGA SSVVQRAIHI
101: PTHRIIALKK INIFEKEKRQ QLLTEIRTLC EAPCYQGLVE FYGAFYTPDS GQISIALEYM DGGSLADIIK IRKSIPEPIL SSMVQKLLHG LSYLHGVRHL
201: VHRDIKPANL LVNLKGEPKI TDFGISAGLE SSIAMCATFV GTVTYMSPER IRNENYSYPA DIWSLGLALF ECGTGEFPYT ANEGPVNLML QILDDPSPSL
301: SRHDYSPEFC SFVDACLKKN PDDRLTADQL LSHPFIMKYS DSALDLGTFV RDIFDPTQRM KDLADMLTIH YYLLFDGSDE FWQHIKTLYN ECSTFSFGGK
401: ESIGPNNIFS TLSNIRNTLA GEWPPEKLVH VVEKLQCRAN GQDGVAIRVS GSFIVGNQFL ICGDGMQVEG LPNLKDLSID IPSKRMGTFH EQFIVEKANI
501: IGRYFITKHE LFITQ
Best Arabidopsis Sequence Match ( AT5G40440.4 )
(BLAST)
001: MAALEELKKK LSPLFDAEKG FSSSSSLDPN DSYLLSDGGT VNLLSRSYGV YNFNELGLQK CTSSHVDESE SSETTYQCAS HEMRVFGAIG SGASSVVQRA
101: IHIPNHRILA LKKINIFERE KRQQLLTEIR TLCEAPCHEG LVDFHGAFYS PDSGQISIAL EYMNGGSLAD ILKVTKKIPE PVLSSLFHKL LQGLSYLHGV
201: RHLVHRDIKP ANLLINLKGE PKITDFGISA GLENSMAMCA TFVGTVTYMS PERIRNDSYS YPADIWSLGL ALFECGTGEF PYIANEGPVN LMLQILDDPS
301: PTPPKQEFSP EFCSFIDACL QKDPDARPTA DQLLSHPFIT KHEKERVDLA TFVQSIFDPT QRLKDLADML TIHYYSLFDG FDDLWHHAKS LYTETSVFSF
401: SGKHNTGSTE IFSALSDIRN TLTGDLPSEK LVHVVEKLHC KPCGSGGVII RAVGSFIVGN QFLICGDGVQ AEGLPSFKDL GFDVASRRVG RFQEQFVVES
501: GDLIGKYFLA KQELYITNLD
Arabidopsis Description
MKK3Mitogen-activated protein kinase kinase 3 [Source:UniProtKB/Swiss-Prot;Acc:O80396]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.