Factsheet for Solyc03g123800.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 6
cytosol 3

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096000.2.1
Solyc05g052510.2.1
Solyc06g005170.2.1
Solyc06g051310.2.1
Solyc06g061040.2.1
Solyc06g073150.2.1
Solyc08g014420.2.1
Solyc08g077200.2.1
Solyc11g017300.1.1
Solyc12g019460.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51660.1	Solyc06g061040.2.1	AT1G32380.1	21798944
AT1G51660.1	Solyc08g077200.2.1	AT1G32380.1	21798944
AT1G51660.1	Solyc06g073150.2.1	AT1G71230.1	21798944
AT1G51660.1	Solyc11g017300.1.1	AT1G71230.1	21798944
AT1G51660.1	Solyc08g014420.2.1	AT2G43790.1	19513235
AT1G51660.1	Solyc12g019460.1.1	AT2G43790.1	19513235
AT1G51660.1	Solyc08g014420.2.1	AT2G43790.1	21798944
AT1G51660.1	Solyc12g019460.1.1	AT2G43790.1	21798944
AT1G51660.1	Solyc03g096000.2.1	AT3G08530.1	21798944
AT1G51660.1	Solyc05g052510.2.1	AT3G08530.1	21798944
AT1G51660.1	Solyc06g051310.2.1	AT3G08530.1	21798944
AT1G51660.1	Solyc06g005170.2.1	AT3G45640.1	19513235
AT1G51660.1	Solyc06g005170.2.1	AT3G45640.1	21798944
AT3G21220.1	Solyc08g014420.2.1	AT2G43790.1	19513235
AT3G21220.1	Solyc12g019460.1.1	AT2G43790.1	19513235

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023739	Potato	plastid	96.94	94.05
CDY32415	Canola	cytosol, plastid	50.42	75.73
Bra001818.1-P	Field mustard	plastid	67.69	73.64
CDX87830	Canola	cytosol	43.73	73.02
CDX82209	Canola	plastid	66.85	72.73
CDX82210	Canola	plastid	61.84	72.55
CDY27532	Canola	cytosol, plastid	66.02	72.48
CDY37306	Canola	cytosol, plastid	66.57	72.21
AT3G21220.1	Thale cress	cytosol, plastid	69.92	72.13
Bra023894.1-P	Field mustard	cytosol, plastid	66.3	71.9
GSMUA_Achr9P13590_001	Banana	mitochondrion	46.52	71.06
CDY46547	Canola	cytosol, plastid	69.64	70.42
CDY52951	Canola	cytosol	69.64	70.22
Bra014295.1-P	Field mustard	cytosol, plastid	69.36	70.14
AT1G51660.1	Thale cress	plastid	71.03	69.67
CDY43920	Canola	cytosol, plastid	64.9	69.14
KRH47006	Soybean	cytosol, plastid	67.41	68.95
HORVU7Hr1G031720.2	Barley	cytosol	51.25	68.91
Bra030430.1-P	Field mustard	cytosol, plastid	64.62	68.84
KRH44646	Soybean	cytosol, plastid	67.41	66.48
GSMUA_Achr4P05870_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	61.28	66.27
GSMUA_Achr9P22810_001	Banana	cytosol	23.4	65.62
Zm00001d045064_P001	Maize	extracellular, plasma membrane	61.56	63.69
VIT_09s0018g01820.t01	Wine grape	plastid	74.37	63.57
TraesCS7B01G059000.1	Wheat	plastid	60.72	63.19
TraesCS7A01G154900.1	Wheat	plastid	61.0	62.75
TraesCS7D01G155100.1	Wheat	plastid	61.0	62.75
KXG19514	Sorghum	plastid	60.17	62.25
OQU83236	Sorghum	cytosol	22.01	62.2
CDY32414	Canola	extracellular, plasma membrane	62.67	62.15
Os06t0191300-01	Rice	plasma membrane	59.05	61.99
Zm00001d018326_P001	Maize	plastid	60.17	60.67
Os02t0787300-01	Rice	plasma membrane	62.12	60.43
HORVU5Hr1G067100.2	Barley	cytosol	38.72	59.91
Bra001817.1-P	Field mustard	cytosol	62.95	59.63
Zm00001d052066_P001	Maize	plastid	60.17	59.34
OQU85840	Sorghum	plastid	61.0	58.87
TraesCS6B01G379500.1	Wheat	cytosol, plastid	60.17	58.06
TraesCS6D01G328800.1	Wheat	cytosol, plastid	59.33	57.88
HORVU0Hr1G038850.2	Barley	cytosol	43.73	53.22
GSMUA_Achr3P05000_001	Banana	plastid	64.62	51.1
Solyc03g097920.1.1	Tomato	cytosol	42.9	45.97
Os06t0191500-01	Rice	cytosol, plastid	37.05	43.46
Solyc03g119490.2.1	Tomato	cytosol, extracellular	35.65	36.16
Solyc12g009020.1.1	Tomato	cytosol	35.93	36.13
Solyc03g019850.2.1	Tomato	cytosol	31.48	21.94
Solyc06g053730.1.1	Tomato	cytosol	22.84	15.74
Solyc02g086790.2.1	Tomato	cytosol	25.91	14.2
Solyc06g068590.2.1	Tomato	cytosol	24.79	13.63
Solyc03g117790.1.1	Tomato	cytosol	24.23	12.46
Solyc05g012130.2.1	Tomato	cytosol	27.86	12.24
Solyc08g083040.2.1	Tomato	cytosol	23.96	11.83
Solyc08g008550.2.1	Tomato	cytosol	22.84	11.52
Solyc07g062940.2.1	Tomato	cytosol	22.84	11.45

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.2.1	Gene3D:3.30.200.20	EMBL:AY691331	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468
GO:GO:0006950	GO:GO:0007049	GO:GO:0007154	GO:GO:0007165	GO:GO:0007346	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0023014
GO:GO:0031098	GO:GO:0032147	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PIRSF:PIRSF000654
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24361	PANTHER:PTHR24361:SF319	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	UniProt:Q66MH8	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc03g123800.1
EnsemblPlants:Solyc03g123800.1.1	UniParc:UPI0000426733	SEG:seg	:	:	:

Description

MAPKK [Source:UniProtKB/TrEMBL;Acc:Q66MH8]

Coordinates

chr3:-:70526180..70527259

Molecular Weight (calculated)

39768.5 Da

IEP (calculated)

8.670

GRAVY (calculated)

-0.360

Length

359 amino acids

Sequence
(BLAST)

001: MRPAANSTNA ASSMPPPSSA GQRSRPRRRT DLTLPLPQRD VALAVPLPLP PTSSSSSSSP LPTPLHFSEL ERVNRIGSGT GGTVYKVLHR PTGRLYALKV
101: IYGNHEDSVR LQMCREIEIL RDVDNPNVVR CHDMFDHNGE IQVLLEFMDK GSLEGIHIPL EQPLSDLTRQ VLSGLYYLHR RKIVHRDIKP SNLLINSRRE
201: VKIADFGVSR VLAQTMDPCN SSVGTIAYMS PERINTDLNH GQYDGYAGDI WSLGVSILEF YLGRFPFSVG RQGDWASLMC AICMSQPPEA PPSASREFRE
301: FIACCLQRDP ARRWTAGQLL RHPFITQNST GTTHTGPATT TTSLSHPLLP PPPHFSSSS

Best Arabidopsis Sequence Match ( AT3G21220.2 )
(BLAST)

001: MKPIQSPSGV ASPMKNRLRK RPDLSLPLPH RDVALAVPLP LPPPSSSSSA PASSSAISTN ISAAKSLSEL ERVNRIGSGA GGTVYKVIHT PTSRPFALKV
101: IYGNHEDTVR RQICREIEIL RSVDHPNVVK CHDMFDHNGE IQVLLEFMDQ GSLEGAHIWQ EQELADLSRQ ILSGLAYLHR RHIVHRDIKP SNLLINSAKN
201: VKIADFGVSR ILAQTMDPCN SSVGTIAYMS PERINTDLNH GRYDGYAGDV WSLGVSILEF YLGRFPFAVS RQGDWASLMC AICMSQPPEA PATASQEFRH
301: FVSCCLQSDP PKRWSAQQLL QHPFILKATG GPNLRQMLPP PRPLPSAS

Arabidopsis Description

MKK5MKK5 [Source:UniProtKB/TrEMBL;Acc:A0A178VIK5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.