Factsheet for Solyc03g119490.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc05g049970.2.1
Solyc08g014420.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g019460.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56580.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT5G56580.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT5G56580.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT5G56580.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT5G56580.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT5G56580.1	Solyc08g014420.2.1	AT2G43790.1	19513235
AT5G56580.1	Solyc12g019460.1.1	AT2G43790.1	19513235
AT5G56580.1	Solyc05g049970.2.1	AT4G01370.1	19513235

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014637	Potato	cytosol	99.15	99.15
VIT_11s0016g02970.t01	Wine grape	cytosol	88.7	88.7
KRH72031	Soybean	cytosol	88.7	88.7
KRH33212	Soybean	cytosol	88.42	87.92
Bra002806.1-P	Field mustard	cytosol	84.18	83.71
CDY11913	Canola	cytosol	84.46	83.52
CDX88578	Canola	cytosol	84.18	83.24
AT5G56580.1	Thale cress	cytosol	83.62	83.15
CDY64969	Canola	cytosol	77.4	82.28
CDY32868	Canola	cytosol	59.04	81.64
Bra006866.1-P	Field mustard	cytosol	78.81	80.17
GSMUA_Achr9P00100_001	Banana	extracellular, vacuole	69.49	79.1
Zm00001d043609_P001	Maize	cytosol, extracellular	77.4	77.18
EES03540	Sorghum	cytosol	77.12	76.9
Os01t0510100-01	Rice	cytosol, plasma membrane	76.84	76.62
TraesCS4B01G315300.1	Wheat	cytosol	76.55	76.34
TraesCS4D01G312300.3	Wheat	cytosol	76.27	76.06
TraesCS4A01G414600.1	Wheat	cytosol	76.27	76.06
CDY39283	Canola	plasma membrane, vacuole	72.32	72.52
Solyc12g009020.1.1	Tomato	cytosol	61.02	60.5
Solyc03g123800.1.1	Tomato	nucleus	36.16	35.65
Solyc03g097920.1.1	Tomato	cytosol	33.33	35.22
Solyc03g019850.2.1	Tomato	cytosol	38.42	26.41
Solyc06g053730.1.1	Tomato	cytosol	24.58	16.7
Solyc02g086790.2.1	Tomato	cytosol	27.4	14.81
Solyc06g068590.2.1	Tomato	cytosol	26.55	14.4
Solyc03g117790.1.1	Tomato	cytosol	26.27	13.32
Solyc07g062940.2.1	Tomato	cytosol	26.27	12.99
Solyc08g008550.2.1	Tomato	cytosol	25.71	12.78
Solyc08g083040.2.1	Tomato	cytosol	25.99	12.65
Solyc05g012130.2.1	Tomato	cytosol	28.53	12.36

Protein Annotations

Gene3D:1.10.510.10	MapMan:13.4.4.1.3	MapMan:18.4.2.1	Gene3D:3.30.200.20	EMBL:AY691332	GO:GO:0000003
GO:GO:0000165	GO:GO:0000166	GO:GO:0000187	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0004708	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468
GO:GO:0006950	GO:GO:0007049	GO:GO:0007112	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0007346	GO:GO:0008150	GO:GO:0008152	GO:GO:0009524	GO:GO:0009653	GO:GO:0009791
GO:GO:0009987	GO:GO:0010311	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
GO:GO:0023014	GO:GO:0031098	GO:GO:0032147	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF00069
PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24361	PANTHER:PTHR24361:SF616
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	UniProt:Q66MH7	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
EnsemblPlantsGene:Solyc03g119490.2	EnsemblPlants:Solyc03g119490.2.1	UniParc:UPI0000426734	SEG:seg	:	:

Description

Mitogen-activated protein kinase kinase 6 [Source:Projected from Arabidopsis thaliana (AT5G56580) UniProtKB/Swiss-Prot;Acc:Q9FJV0]

Coordinates

chr3:+:68085036..68088176

Molecular Weight (calculated)

39635.8 Da

IEP (calculated)

6.287

GRAVY (calculated)

-0.097

Length

354 amino acids

Sequence
(BLAST)

001: MKTAKPLKQL KLSVPAQDTP ISSFLTASGT FHDGDLLLNQ KGLRLISEEN ESLPSETKEI DLQFSLEDLE TIKVIGKGSG GVVQLVRHKW VGTLFALKVI
101: QMNIQEDIRK QIVQELKINQ ASQCPHVVVC YHSFYHNGAI SLVLEYMDRG SLVDVIGQLK TILEPYLAVV CKQVLQGLVY LHHERHVIHR DIKPSNLLVN
201: HKGEVKITDF GVSAMLASSM GQRDTFVGTY NYMAPERISG STYDYKSDIW SLGMVILECA IGRFPYIQSE DQQARPSFYE LLDAIVSSPP PSAPVDQFSP
301: EFCSFVSACI QKDPRDRSSA LDLLSHPFVK KFEDKDIDLS ILVSSLEPPV NFPR

Best Arabidopsis Sequence Match ( AT5G56580.1 )
(BLAST)

001: MVKIKSNLKQ LKLSVPAQES PISSFLTASG TFHDGDFLLN QKGLRLTSDE KQSRQSDSKE LDFEITAEDL ETVKVIGKGS GGVVQLVRHK WVGKFFAMKV
101: IQMNIQEEIR KQIVQELKIN QASSQCPHVV VCYHSFYHNG AFSLVLEYMD RGSLADVIRQ VKTILEPYLA VVCKQVLLGL VYLHNERHVI HRDIKPSNLL
201: VNHKGEVKIS DFGVSASLAS SMGQRDTFVG TYNYMSPERI SGSTYDYSSD IWSLGMSVLE CAIGRFPYLE SEDQQNPPSF YELLAAIVEN PPPTAPSDQF
301: SPEFCSFVSA CIQKDPPARA SSLDLLSHPF IKKFEDKDID LGILVGTLEP PVNYLR

Arabidopsis Description

MKK6Mitogen-activated protein kinase kinase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.