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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0267900-01
Os01t0279300-01
Os01t0810300-01
Os03t0319300-01
Os05t0491000-01
Os05t0491100-01
Os06t0154500-01
Os07t0687200-02
Os10t0533600-01
Os12t0603800-00

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G56580.1 Os01t0267900-01 AT2G41100.1 17360592
AT5G56580.1 Os01t0279300-01 AT2G41100.1 17360592
AT5G56580.1 Os01t0810300-01 AT2G41100.1 17360592
AT5G56580.1 Os03t0319300-01 AT2G41100.1 17360592
AT5G56580.1 Os05t0491000-01 AT2G41100.1 17360592
AT5G56580.1 Os05t0491100-01 AT2G41100.1 17360592
AT5G56580.1 Os07t0687200-02 AT2G41100.1 17360592
AT5G56580.1 Os12t0603800-00 AT2G41100.1 17360592
AT5G56580.1 Os06t0154500-01 AT2G43790.1 19513235
AT5G56580.1 Os10t0533600-01 AT4G01370.1 19513235
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4B01G315300.1 Wheat cytosol 94.08 94.08
TraesCS4D01G312300.3 Wheat cytosol 93.8 93.8
TraesCS4A01G414600.1 Wheat cytosol 93.8 93.8
EES03540 Sorghum cytosol 93.52 93.52
Zm00001d043609_P001 Maize cytosol, extracellular 92.39 92.39
GSMUA_Achr9P00100_001 Banana extracellular, vacuole 69.86 79.74
PGSC0003DMT400014637 Potato cytosol 77.46 77.68
VIT_11s0016g02970.t01 Wine grape cytosol 76.9 77.12
Solyc03g119490.2.1 Tomato cytosol, extracellular 76.62 76.84
KRH72031 Soybean cytosol 76.06 76.27
KRH33212 Soybean cytosol 76.34 76.12
AT5G56580.1 Thale cress cytosol 70.99 70.79
CDX88578 Canola cytosol 71.27 70.67
CDY11913 Canola cytosol 71.27 70.67
Bra002806.1-P Field mustard cytosol 70.42 70.22
CDY32868 Canola cytosol 49.86 69.14
CDY64969 Canola cytosol 64.79 69.07
Bra006866.1-P Field mustard cytosol 66.76 68.1
CDY39283 Canola plasma membrane, vacuole 60.85 61.19
Os06t0147800-01 Rice cytosol 59.44 59.94
Os11t0226100-00 Rice cytosol 31.27 51.63
Os06t0473200-02 Rice cytosol 36.9 36.9
Os06t0191300-01 Rice plasma membrane 33.8 35.09
Os02t0787300-01 Rice plasma membrane 34.65 33.33
Os03t0225100-02 Rice mitochondrion 31.27 32.74
Os06t0191500-01 Rice cytosol, plastid 24.23 28.1
Os02t0694900-00 Rice mitochondrion 28.45 24.94
Os03t0713500-00 Rice cytosol, nucleus, plastid 29.3 22.46
Os02t0179000-00 Rice cytosol 25.63 21.93
Os01t0284300-00 Rice cytosol 21.97 21.25
Os02t0791700-00 Rice plasma membrane 27.61 14.5
Os07t0507300-01 Rice cytosol 26.76 13.69
Os06t0486400-01 Rice plasma membrane 25.92 13.28
Os03t0755000-01 Rice cytosol, mitochondrion, plastid 27.89 11.8
Os10t0518800-01 Rice plasma membrane 24.51 11.74
Os03t0114300-01 Rice mitochondrion 24.23 11.61
Os03t0754800-01 Rice cytosol 0.28 0.31
Protein Annotations
Gene3D:1.10.510.10MapMan:13.4.4.1.3MapMan:18.4.2.1Gene3D:3.30.200.20EntrezGene:4324023EMBL:AF216314
ProteinID:BAD73135.1ProteinID:BAD73553.1ProteinID:BAF05078.1ProteinID:BAS72372.1GO:GO:0000003GO:GO:0000165
GO:GO:0000166GO:GO:0000187GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0004674
GO:GO:0004708GO:GO:0004871GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006464GO:GO:0006468GO:GO:0006950
GO:GO:0007049GO:GO:0007112GO:GO:0007154GO:GO:0007165GO:GO:0007275GO:GO:0007346
GO:GO:0008150GO:GO:0008152GO:GO:0009524GO:GO:0009653GO:GO:0009791GO:GO:0009987
GO:GO:0010311GO:GO:0016043GO:GO:0016301GO:GO:0016310GO:GO:0016740GO:GO:0019538
GO:GO:0023014GO:GO:0031098GO:GO:0032147InterPro:IPR000719InterPro:Kinase-like_dom_sfEnsemblPlantsGene:Os01g0510100
EnsemblPlants:Os01t0510100-01PFAM:PF00069PIRSF:PIRSF000654ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011
PANTHER:PTHR24361PANTHER:PTHR24361:SF616InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSUniProt:Q5QN75SMART:SM00220
SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASUniParc:UPI00000A6AD5RefSeq:XP_015621394.1::
Description
MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6MAP kinase kinase 1. (Os01t0510100-01)
Coordinates
chr1:+:17904834..17910037
Molecular Weight (calculated)
40002.3 Da
IEP (calculated)
5.622
GRAVY (calculated)
-0.189
Length
355 amino acids
Sequence
(BLAST)
001: MRGKKPHKEL KLSVPAQETP VDKFLTASGT FKDGELRLNQ RGLQLISEET ADEPQSTNLK VEDVQLSMDD LEMIQVIGKG SGGIVQLVRH KWVGTLYALK
101: GIQMNIQEAV RKQIVQELKI NQATQNAHIV LCHQSFYHNG VIYLVLEYMD RGSLADIIKQ VKTILEPYLA VLCKQVLEGL LYLHHERHVI HRDIKPSNLL
201: VNRKGEVKIT DFGVSAVLAS SMGQRDTFVG TYNYMAPERI SGSSYDYKSD IWSLGLVILE CAIGRFPYIP SEGEGWLSFY ELLEAIVDQP PPSAPADQFS
301: PEFCAFISSC IQKDPAERMS ASELLNHPFI KKFEDKDLDL RILVESLEPP MNISE
Best Arabidopsis Sequence Match ( AT5G56580.1 )
(BLAST)
001: MVKIKSNLKQ LKLSVPAQES PISSFLTASG TFHDGDFLLN QKGLRLTSDE KQSRQSDSKE LDFEITAEDL ETVKVIGKGS GGVVQLVRHK WVGKFFAMKV
101: IQMNIQEEIR KQIVQELKIN QASSQCPHVV VCYHSFYHNG AFSLVLEYMD RGSLADVIRQ VKTILEPYLA VVCKQVLLGL VYLHNERHVI HRDIKPSNLL
201: VNHKGEVKIS DFGVSASLAS SMGQRDTFVG TYNYMSPERI SGSTYDYSSD IWSLGMSVLE CAIGRFPYLE SEDQQNPPSF YELLAAIVEN PPPTAPSDQF
301: SPEFCSFVSA CIQKDPPARA SSLDLLSHPF IKKFEDKDID LGILVGTLEP PVNYLR
Arabidopsis Description
MKK6Mitogen-activated protein kinase kinase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJV0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.