Factsheet for VIT_11s0016g02970.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0094g00900.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01
VIT_15s0046g02010.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56580.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT5G56580.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT5G56580.1	VIT_05s0094g00900.t01	AT2G43790.1	19513235
AT5G56580.1	VIT_15s0046g02010.t01	AT4G01370.1	19513235

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014637	Potato	cytosol	89.27	89.27
KRH72031	Soybean	cytosol	88.98	88.98
Solyc03g119490.2.1	Tomato	cytosol, extracellular	88.7	88.7
KRH33212	Soybean	cytosol	88.7	88.2
Bra002806.1-P	Field mustard	cytosol	83.62	83.15
CDY11913	Canola	cytosol	83.9	82.96
AT5G56580.1	Thale cress	cytosol	83.33	82.87
CDX88578	Canola	cytosol	83.62	82.68
CDY64969	Canola	cytosol	76.84	81.68
CDY32868	Canola	cytosol	58.19	80.47
GSMUA_Achr9P00100_001	Banana	extracellular, vacuole	70.06	79.74
Bra006866.1-P	Field mustard	cytosol	77.97	79.31
Os01t0510100-01	Rice	cytosol, plasma membrane	77.12	76.9
Zm00001d043609_P001	Maize	cytosol, extracellular	76.84	76.62
EES03540	Sorghum	cytosol	76.55	76.34
TraesCS4B01G315300.1	Wheat	cytosol	76.55	76.34
TraesCS4A01G414600.1	Wheat	cytosol	76.27	76.06
TraesCS4D01G312300.3	Wheat	cytosol	76.27	76.06
CDY39283	Canola	plasma membrane, vacuole	70.9	71.1
VIT_11s0016g01770.t01	Wine grape	cytosol, nucleus, plasma membrane	61.58	61.58
VIT_17s0000g01970.t01	Wine grape	cytosol	34.46	38.85
VIT_09s0018g01820.t01	Wine grape	plastid	34.46	29.05
VIT_14s0066g00670.t01	Wine grape	cytosol	38.98	26.64
VIT_01s0127g00690.t01	Wine grape	cytosol	26.27	23.72
VIT_09s0018g01390.t01	Wine grape	cytosol	25.42	15.33
VIT_05s0049g00060.t01	Wine grape	cytosol	23.16	15.1
VIT_14s0066g01170.t01	Wine grape	cytosol	25.42	13.6
VIT_19s0014g02310.t01	Wine grape	cytosol	25.14	12.61
VIT_01s0011g00300.t01	Wine grape	cytosol	26.84	11.43
VIT_02s0025g02480.t01	Wine grape	cytosol	23.16	11.25

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100252603	wikigene:100252603	MapMan:13.4.4.1.3	MapMan:18.4.2.1	Gene3D:3.30.200.20
UniProt:A5C0U3	EMBL:AM478166	ProteinID:CAN79548	ProteinID:CAN79548.1	ProteinID:CBI27984	ProteinID:CBI27984.3
EMBL:FN595756	GO:GO:0000003	GO:GO:0000165	GO:GO:0000166	GO:GO:0000187	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0004708	GO:GO:0004871	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0006468	GO:GO:0006950	GO:GO:0007049	GO:GO:0007112	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0007346	GO:GO:0008150	GO:GO:0008152	GO:GO:0009524	GO:GO:0009653
GO:GO:0009791	GO:GO:0009987	GO:GO:0010311	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	GO:GO:0023014	GO:GO:0031098	GO:GO:0032147	InterPro:IPR000719	InterPro:Kinase-like_dom_sf
EntrezGene:LOC100252603	wikigene:LOC100252603	PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR24361	PANTHER:PTHR24361:SF616	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0001524A97	ArrayExpress:VIT_11s0016g02970	EnsemblPlantsGene:VIT_11s0016g02970	EnsemblPlants:VIT_11s0016g02970.t01
unigene:Vvi.7498	RefSeq:XP_002283491	RefSeq:XP_002283491.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:+:2377706..2381306

Molecular Weight (calculated)

39854.1 Da

IEP (calculated)

6.437

GRAVY (calculated)

-0.181

Length

354 amino acids

Sequence
(BLAST)

001: MKSKKPLKQL KLSVPAQETP ITSFLTASGT FQDGDLLLNQ KGLRLISEEK EPRPSEAKEL DVQFSLEDLE TIKVIGKGSG GVVQLVRHKW VGTLFALKVI
101: QMNIQENFRK QIVQELKINQ ASQCSHIVVC YHSFYHNGVI SLVLEYMDRG SLVDVIRQVK TILEPYLAVL CKQVLQGLVY LHHERHVIHR DIKPSNLLVN
201: HKGEVKITDF GVSAMLGSSM GQRDTFVGTY NYMSPERIKG STYDYSSDIW SLGMVALECA IGHFPYMQSE DQQSGPSFYE LLEAIVESPP PSAPPDQFSP
301: EFCSFISACI QKNPQDRLSS LDLVSHPFIK KFEDKDIDLE ILVGSLEPPV NFPR

Best Arabidopsis Sequence Match ( AT5G56580.1 )
(BLAST)

001: MVKIKSNLKQ LKLSVPAQES PISSFLTASG TFHDGDFLLN QKGLRLTSDE KQSRQSDSKE LDFEITAEDL ETVKVIGKGS GGVVQLVRHK WVGKFFAMKV
101: IQMNIQEEIR KQIVQELKIN QASSQCPHVV VCYHSFYHNG AFSLVLEYMD RGSLADVIRQ VKTILEPYLA VVCKQVLLGL VYLHNERHVI HRDIKPSNLL
201: VNHKGEVKIS DFGVSASLAS SMGQRDTFVG TYNYMSPERI SGSTYDYSSD IWSLGMSVLE CAIGRFPYLE SEDQQNPPSF YELLAAIVEN PPPTAPSDQF
301: SPEFCSFVSA CIQKDPPARA SSLDLLSHPF IKKFEDKDID LGILVGTLEP PVNYLR

Arabidopsis Description

MKK6Mitogen-activated protein kinase kinase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.