Factsheet for VIT_17s0000g01970.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g04920.t01
VIT_02s0025g02980.t01
VIT_05s0094g00900.t01
VIT_12s0142g00130.t01
VIT_14s0108g00940.t01
VIT_18s0001g13010.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G18350.1	VIT_18s0001g13010.t01	AT1G59580.1	19513235
AT1G73500.1	VIT_01s0011g04920.t01	AT2G01450.1	19513235
AT1G73500.1	VIT_12s0142g00130.t01	AT2G42880.1	19513235
AT1G73500.1	VIT_05s0094g00900.t01	AT2G43790.1	19513235
AT1G73500.1	VIT_14s0108g00940.t01	AT3G01180.1	21798944
AT1G73500.1	VIT_05s0094g00900.t01	AT3G59790.1	19513235
AT1G73500.1	VIT_02s0025g02980.t01	AT4G01480.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008099.1-P	Field mustard	mitochondrion	66.56	68.3
CDX82067	Canola	mitochondrion	66.56	68.3
CDY71921	Canola	mitochondrion	66.56	68.3
Bra003842.1-P	Field mustard	mitochondrion	66.24	67.53
CDX68224	Canola	mitochondrion	66.24	67.53
CDY11103	Canola	mitochondrion	65.61	67.1
PGSC0003DMT400083995	Potato	cytosol	71.02	66.97
KRH48688	Soybean	mitochondrion	67.52	66.67
Solyc03g097920.1.1	Tomato	cytosol	71.02	66.57
KRH39022	Soybean	cytosol, mitochondrion	67.52	66.46
AT1G73500.1	Thale cress	mitochondrion	65.61	66.45
AT1G18350.1	Thale cress	mitochondrion	60.19	61.56
KRH39023	Soybean	mitochondrion	40.76	57.66
CDY05240	Canola	mitochondrion	57.32	56.78
Bra020769.1-P	Field mustard	plastid	55.1	56.17
CDY24712	Canola	mitochondrion	56.37	55.84
KRH48686	Soybean	mitochondrion	41.4	54.17
AT3G06230.1	Thale cress	plastid	46.82	50.17
VIT_09s0018g01820.t01	Wine grape	plastid	49.36	36.9
VIT_11s0016g01770.t01	Wine grape	cytosol, nucleus, plasma membrane	40.13	35.59
VIT_11s0016g02970.t01	Wine grape	cytosol	38.85	34.46
VIT_01s0127g00690.t01	Wine grape	cytosol	28.34	22.7
VIT_14s0066g00670.t01	Wine grape	cytosol	36.31	22.01
VIT_05s0049g00060.t01	Wine grape	cytosol	27.07	15.65
VIT_09s0018g01390.t01	Wine grape	cytosol	28.03	14.99
VIT_14s0066g01170.t01	Wine grape	cytosol	28.98	13.75
VIT_02s0025g02480.t01	Wine grape	cytosol	28.34	12.21
VIT_19s0014g02310.t01	Wine grape	cytosol	27.39	12.18
VIT_01s0011g00300.t01	Wine grape	cytosol	30.89	11.67

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100254418	wikigene:100254418	MapMan:18.4.2.1	Gene3D:3.30.200.20	EMBL:AM426873
ProteinID:CAN75681	ProteinID:CAN75681.1	ProteinID:CCB43302	ProteinID:CCB43302.1	UniProt:F6GSP7	EMBL:FN594950
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0006468	GO:GO:0006950	GO:GO:0007049	GO:GO:0007154	GO:GO:0007165	GO:GO:0007346
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
GO:GO:0023014	GO:GO:0031098	GO:GO:0032147	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100254418
wikigene:LOC100254418	PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR24361	PANTHER:PTHR24361:SF453	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	TIGR:TC53469	UniParc:UPI00015C9B41	ArrayExpress:VIT_17s0000g01970	EnsemblPlantsGene:VIT_17s0000g01970	EnsemblPlants:VIT_17s0000g01970.t01
unigene:Vvi.12666	RefSeq:XP_002283080	RefSeq:XP_002283080.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:+:1537383..1538551

Molecular Weight (calculated)

34937.3 Da

IEP (calculated)

7.026

GRAVY (calculated)

-0.143

Length

314 amino acids

Sequence
(BLAST)

001: MAVVRDRRQL NLRLPLPEIS ERRPRFPLPL PPTNLPFSSG ATTAADLEKI EVIGHGNGGT VYKVQHKRTA ANYALKVVHG DCDPTVRRQV LREMEILRFT
101: DSPFVVQCHG IFQKPSGDIA ILMEYMDAGT LKTLLETKGT FSEVDLAGVA GQVLNGLSYL HSHKIIHRDI KPANLLVNGN MEVKIADFGV SKIMRRMLDS
201: CNSYVGTCAY MSPERFDPDS HGSNYDGYSG DIWSLGLTLL ELYVGHFPLL PAGQKPDWAT LMCAICFGEE PALPEGVSEE FRNFIECCLQ KDSTKRWTAA
301: QLLSHPFICK QSVI

Best Arabidopsis Sequence Match ( AT1G73500.1 )
(BLAST)

001: MALVRERRQL NLRLPLPPIS DRRFSTSSSS ATTTTVAGCN GISACDLEKL NVLGCGNGGI VYKVRHKTTS EIYALKTVNG DMDPIFTRQL MREMEILRRT
101: DSPYVVKCHG IFEKPVVGEV SILMEYMDGG TLESLRGGVT EQKLAGFAKQ ILKGLSYLHA LKIVHRDIKP ANLLLNSKNE VKIADFGVSK ILVRSLDSCN
201: SYVGTCAYMS PERFDSESSG GSSDIYAGDI WSFGLMMLEL LVGHFPLLPP GQRPDWATLM CAVCFGEPPR APEGCSEEFR SFVECCLRKD SSKRWTAPQL
301: LAHPFLREDL

Arabidopsis Description

MKK9Mitogen-activated protein kinase kinase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX43]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.