CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67813
CDX68218
CDX71876
CDX77826
CDX79801
CDX79842
CDX83459
CDX83515
CDX89033
CDX89034
CDX97250
CDX98395
CDY01933
CDY05979
CDY05980
CDY07141
CDY11098
CDY17674
CDY17911
CDY34693
CDY37538
CDY40377
CDY41084
CDY42817
CDY43274
CDY44256
CDY44551
CDY45782
CDY45885
CDY55806
CDY60195
CDY63829

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G18350.1	CDY44551	AT1G59580.1	19513235
AT1G18350.1	CDY45885	AT1G59580.1	19513235
AT1G18350.1	CDX68218	AT1G73670.1	19513235
AT1G18350.1	CDY11098	AT1G73670.1	19513235
AT1G73500.1	CDX77826	AT2G01450.1	19513235
AT1G73500.1	CDY17674	AT2G01450.1	19513235
AT1G73500.1	CDY40377	AT2G01450.1	19513235
AT1G73500.1	CDY41084	AT2G01450.1	19513235
AT1G73500.1	CDY63829	AT2G01450.1	19513235
AT1G73500.1	CDX79842	AT2G42880.1	19513235
AT1G73500.1	CDX83515	AT2G42880.1	19513235
AT1G73500.1	CDY42817	AT2G42880.1	19513235
AT1G73500.1	CDY60195	AT2G42880.1	19513235
AT1G73500.1	CDX79801	AT2G43790.1	19513235
AT1G73500.1	CDX83459	AT2G43790.1	19513235
AT1G73500.1	CDY17911	AT2G43790.1	19513235
AT1G73500.1	CDY44256	AT2G43790.1	19513235
AT1G73500.1	CDY34693	AT3G01180.1	21798944
AT1G73500.1	CDY37538	AT3G01180.1	21798944
AT1G73500.1	CDY43274	AT3G01180.1	21798944
AT1G73500.1	CDY55806	AT3G01180.1	21798944
AT1G73500.1	CDX67813	AT3G59790.1	19513235
AT1G73500.1	CDX71876	AT3G59790.1	19513235
AT1G73500.1	CDX89033	AT3G59790.1	19513235
AT1G73500.1	CDX89034	AT3G59790.1	19513235
AT1G73500.1	CDX98395	AT3G59790.1	19513235
AT1G73500.1	CDY05979	AT3G59790.1	19513235
AT1G73500.1	CDY05980	AT3G59790.1	19513235
AT1G73500.1	CDY45782	AT3G59790.1	19513235
AT1G73500.1	CDX97250	AT4G01480.1	21798944
AT1G73500.1	CDY01933	AT4G01480.1	21798944
AT1G73500.1	CDY07141	AT4G01480.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68224	Canola	mitochondrion	98.37	98.05
Bra003842.1-P	Field mustard	mitochondrion	98.05	97.73
CDY71921	Canola	mitochondrion	91.53	91.83
CDX82067	Canola	mitochondrion	91.53	91.83
AT1G73500.1	Thale cress	mitochondrion	92.18	91.29
AT1G18350.1	Thale cress	mitochondrion	79.48	79.48
CDY24712	Canola	mitochondrion	68.08	65.93
CDY05240	Canola	mitochondrion	68.08	65.93
VIT_17s0000g01970.t01	Wine grape	cytosol	67.1	65.61
KRH48688	Soybean	mitochondrion	63.19	61.01
KRH39022	Soybean	cytosol, mitochondrion	62.87	60.5
PGSC0003DMT400083995	Potato	cytosol	63.52	58.56
Solyc03g097920.1.1	Tomato	cytosol	63.19	57.91
KRH39023	Soybean	mitochondrion	37.78	52.25
KRH48686	Soybean	mitochondrion	39.41	50.42
CDX87830	Canola	cytosol	33.88	48.37
CDX82210	Canola	plastid	46.58	46.73
CDY32415	Canola	cytosol, plastid	36.16	46.44
CDY27532	Canola	cytosol, plastid	48.53	45.57
CDY37306	Canola	cytosol, plastid	48.53	45.02
CDX82209	Canola	plastid	47.23	43.94
CDY43920	Canola	cytosol, plastid	48.21	43.92
CDY46547	Canola	cytosol, plastid	47.88	41.41
CDY32414	Canola	extracellular, plasma membrane	48.21	40.88
CDY52951	Canola	cytosol	46.58	40.17
CDY01289	Canola	cytosol	21.82	38.07
CDX93844	Canola	cytosol	29.97	37.7
CDY64969	Canola	cytosol	37.78	34.83
CDY32868	Canola	cytosol	28.01	33.59
CDX88578	Canola	cytosol	39.09	33.52
CDY11913	Canola	cytosol	38.76	33.24
CDX92751	Canola	cytosol	36.48	31.73
CDY42757	Canola	cytosol	36.48	31.55
CDY39283	Canola	plasma membrane, vacuole	36.16	31.44
CDX68588	Canola	cytosol	35.83	30.22
CDY43527	Canola	cytosol	35.18	29.67
CDX78589	Canola	mitochondrion	21.17	28.76
CDY70105	Canola	cytosol	27.04	27.12
CDX70576	Canola	cytosol	15.31	24.87
CDY42585	Canola	cytosol	37.46	22.2
CDY50119	Canola	cytosol	37.13	22.01
CDY40903	Canola	cytosol	33.55	19.0
CDY62124	Canola	cytosol	25.73	16.39
CDY69326	Canola	cytosol	25.73	16.36
CDY47150	Canola	cytosol	25.73	16.36
CDY11594	Canola	cytosol	28.66	15.74
CDY57851	Canola	cytosol	28.66	14.77
CDY09438	Canola	cytosol	28.66	14.62
CDY03750	Canola	cytosol	28.34	14.43
CDX95954	Canola	cytosol	33.55	13.29
CDX85586	Canola	cytosol	27.04	12.75
CDX91026	Canola	cytosol	27.04	12.75
CDY54149	Canola	cytosol	32.25	12.52
CDY25260	Canola	cytosol	26.71	12.42
CDY53517	Canola	mitochondrion	27.36	12.35
CDX94250	Canola	cytosol	26.71	12.35
CDX86848	Canola	mitochondrion	27.04	12.31
CDY45937	Canola	cytosol	27.36	12.28
CDX97641	Canola	cytosol	27.04	12.28
CDX98536	Canola	cytosol	27.04	12.28
CDY50304	Canola	cytosol	32.25	12.22
CDX69563	Canola	cytosol	26.71	12.18
CDY09880	Canola	cytosol	26.71	12.17
CDX88555	Canola	cytosol	27.04	11.98
CDX67984	Canola	cytosol	26.38	11.89
CDX87368	Canola	cytosol	27.04	11.77
CDX79332	Canola	cytosol	26.38	11.57
CDY03490	Canola	mitochondrion	26.38	11.39
CDX76327	Canola	mitochondrion	26.38	11.28
CDY25875	Canola	plastid	27.69	10.9
CDX73633	Canola	cytosol	7.17	10.0
CDY25732	Canola	plastid	12.38	6.93
CDY70962	Canola	cytosol	5.54	4.66
CDY40902	Canola	nucleus	0.0	0.0
CDY03491	Canola	plastid	0.0	0.0
CDX76326	Canola	plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.2.1	Gene3D:3.30.200.20	GO:A0A078FGD4	UniProt:A0A078FGD4	EnsemblPlants:CDY11103
ProteinID:CDY11103	ProteinID:CDY11103.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00049082001
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR24361	PANTHER:PTHR24361:SF453	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0004EE5FA9	SEG:seg	:	:

Description

BnaC06g23550DBnaC06g23550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGD4]

Coordinates

chrLK032009:+:319266..320266

Molecular Weight (calculated)

34115.5 Da

IEP (calculated)

7.694

GRAVY (calculated)

-0.095

Length

307 amino acids

Sequence
(BLAST)

001: MALVRERRQL NLRLPLPPIS DRRFSLPSVT TTVATSGGIS AADLEKLNVL GCGNGGVVYR VRHKNTGDLY ALKTVNGDMD PILTRQLMRE MEILRRTDSP
101: YVVRCHGIFE KQVVGEVSIL MEYMDGGTLE SLRGAVTEQR LAGFARQILK GLSYLHALKI VHRDIKPANL LLNSKDEVKI ADFGVSKILV RSLDSCNSYV
201: GTCAYMSPER FDSESSGGGS DVYAGDIWSF GLMMLELLVG HFPLLPPGQR PDWATLMCAV CFGEPPRAPE VCSEEFRSFV ECCLRKDSSK RWTASQLLGH
301: PFLREDL

Best Arabidopsis Sequence Match ( AT1G73500.1 )
(BLAST)

001: MALVRERRQL NLRLPLPPIS DRRFSTSSSS ATTTTVAGCN GISACDLEKL NVLGCGNGGI VYKVRHKTTS EIYALKTVNG DMDPIFTRQL MREMEILRRT
101: DSPYVVKCHG IFEKPVVGEV SILMEYMDGG TLESLRGGVT EQKLAGFAKQ ILKGLSYLHA LKIVHRDIKP ANLLLNSKNE VKIADFGVSK ILVRSLDSCN
201: SYVGTCAYMS PERFDSESSG GSSDIYAGDI WSFGLMMLEL LVGHFPLLPP GQRPDWATLM CAVCFGEPPR APEGCSEEFR SFVECCLRKD SSKRWTAPQL
301: LAHPFLREDL

Arabidopsis Description

MKK9Mitogen-activated protein kinase kinase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX43]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.