Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70576 | Canola | cytosol | 12.27 | 14.29 |
| CDX78589 | Canola | mitochondrion | 14.55 | 14.16 |
| CDY70105 | Canola | cytosol | 16.82 | 12.09 |
| CDY32415 | Canola | cytosol, plastid | 9.09 | 8.37 |
| CDX93844 | Canola | cytosol | 9.09 | 8.2 |
| CDX82067 | Canola | mitochondrion | 11.36 | 8.17 |
| CDY71921 | Canola | mitochondrion | 10.91 | 7.84 |
| CDY27532 | Canola | cytosol, plastid | 11.36 | 7.65 |
| CDY37306 | Canola | cytosol, plastid | 11.36 | 7.55 |
| CDY62124 | Canola | cytosol | 16.36 | 7.47 |
| CDY69326 | Canola | cytosol | 16.36 | 7.45 |
| CDY47150 | Canola | cytosol | 16.36 | 7.45 |
| CDX82210 | Canola | plastid | 10.0 | 7.19 |
| CDY11103 | Canola | mitochondrion | 10.0 | 7.17 |
| CDX68224 | Canola | mitochondrion | 10.0 | 7.14 |
| CDX87830 | Canola | cytosol | 6.82 | 6.98 |
| CDY46547 | Canola | cytosol, plastid | 10.91 | 6.76 |
| CDY24712 | Canola | mitochondrion | 9.55 | 6.62 |
| CDY05240 | Canola | mitochondrion | 9.55 | 6.62 |
| CDY52951 | Canola | cytosol | 10.45 | 6.46 |
| CDX82209 | Canola | plastid | 9.55 | 6.36 |
| CDY32414 | Canola | extracellular, plasma membrane | 10.45 | 6.35 |
| CDX92751 | Canola | cytosol | 10.0 | 6.23 |
| CDX86848 | Canola | mitochondrion | 19.09 | 6.23 |
| CDY25260 | Canola | cytosol | 18.64 | 6.21 |
| CDY42757 | Canola | cytosol | 10.0 | 6.2 |
| CDY53517 | Canola | mitochondrion | 19.09 | 6.18 |
| CDX94250 | Canola | cytosol | 18.64 | 6.17 |
| CDY43527 | Canola | cytosol | 10.0 | 6.04 |
| CDX68588 | Canola | cytosol | 10.0 | 6.04 |
| CDY43920 | Canola | cytosol, plastid | 9.09 | 5.93 |
| CDY11594 | Canola | cytosol | 15.0 | 5.9 |
| CDX67984 | Canola | cytosol | 18.18 | 5.87 |
| CDY32868 | Canola | cytosol | 6.82 | 5.86 |
| CDX88555 | Canola | cytosol | 18.18 | 5.77 |
| CDX79332 | Canola | cytosol | 18.18 | 5.71 |
| CDY01289 | Canola | cytosol | 4.55 | 5.68 |
| CDX87368 | Canola | cytosol | 18.18 | 5.67 |
| CDY57851 | Canola | cytosol | 15.0 | 5.54 |
| CDX85586 | Canola | cytosol | 16.36 | 5.53 |
| CDX91026 | Canola | cytosol | 16.36 | 5.53 |
| CDY64969 | Canola | cytosol | 8.18 | 5.41 |
| CDY40903 | Canola | cytosol | 13.18 | 5.35 |
| CDY03490 | Canola | mitochondrion | 17.27 | 5.34 |
| CDY09438 | Canola | cytosol | 14.55 | 5.32 |
| CDY11913 | Canola | cytosol | 8.64 | 5.31 |
| CDX88578 | Canola | cytosol | 8.64 | 5.31 |
| CDY03750 | Canola | cytosol | 14.55 | 5.31 |
| CDX76327 | Canola | mitochondrion | 17.27 | 5.29 |
| CDX69563 | Canola | cytosol | 15.91 | 5.2 |
| CDY09880 | Canola | cytosol | 15.91 | 5.19 |
| CDY39283 | Canola | plasma membrane, vacuole | 7.73 | 4.82 |
| CDX97641 | Canola | cytosol | 12.27 | 3.99 |
| CDX98536 | Canola | cytosol | 12.27 | 3.99 |
| CDY45937 | Canola | cytosol | 12.27 | 3.95 |
| CDY54149 | Canola | cytosol | 14.09 | 3.92 |
| CDY50304 | Canola | cytosol | 14.09 | 3.83 |
| CDX95954 | Canola | cytosol | 13.18 | 3.74 |
| CDY25875 | Canola | plastid | 12.27 | 3.46 |
| CDY50119 | Canola | cytosol | 6.36 | 2.7 |
| CDY42585 | Canola | cytosol | 6.36 | 2.7 |
| CDY25732 | Canola | plastid | 2.73 | 1.09 |
| CDY70962 | Canola | cytosol | 0.45 | 0.27 |
| CDY03491 | Canola | plastid | 0.0 | 0.0 |
| CDX76326 | Canola | plastid | 0.0 | 0.0 |
| CDY40902 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX73633 | EnsemblPlantsGene:GSBRNA2T00109202001 | ProteinID:CDX73633 | ProteinID:CDX73633.1 | SEG:seg | UniParc:UPI0004EDED62 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC08g23700D
Coordinates
chrLK031799:+:1755900..1759470
Molecular Weight (calculated)
25184.5 Da
IEP (calculated)
6.503
GRAVY (calculated)
-0.101
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPRFVEGVE TISKERTIKE EEILKKLAIS QWLADGPKTW CYVCFSEFLW PNCTILMYND VAVRCFECRK MVVAMEDSSN PFKGLDPSQA IHSGRCSSVV
101: EARLLHYWEA RRGCFIMRVD LLLVDVNVID TDDPLYLPRH VFTHGQLYVA ISRVTTPTGL MISDETSDVD GKDGVTNIVY NEIVKDVRVT QASLLPVKST
201: SGYKGTRRRR DIIKLEMFFC
101: EARLLHYWEA RRGCFIMRVD LLLVDVNVID TDDPLYLPRH VFTHGQLYVA ISRVTTPTGL MISDETSDVD GKDGVTNIVY NEIVKDVRVT QASLLPVKST
201: SGYKGTRRRR DIIKLEMFFC
001: MRVRDKNGDV GTFVVLDGEG TKIAGRSVRD VLNEYMEAVG KDSYEGINTK WNTSRHCTCC YNVGNGNAPT CETDDGEVVE MDTSFFLKHN GNRLQQVTKG
101: AYVQFSVSQP NFQYLTERGI LTPHNEYVDE INAYMLSQVG GDSKEYLSSY SIGKADTIGA DYEALYHVKY LNSLEFPSLP KHKISLKKGV PIMQMRNFNQ
201: KEGLCNGTRL IVTNLGEQVI EAQIVTGTHA GKMVSIPRFI LSPPQSEHPF TLRRQQFPMR VCYAMTIIKN QGQSLKSDVL YLPNPVFSHV QLYVALSRVT
301: SPIGLTILHG DDQKNDEVKN IVYKEFYNDL PKETDPS
101: AYVQFSVSQP NFQYLTERGI LTPHNEYVDE INAYMLSQVG GDSKEYLSSY SIGKADTIGA DYEALYHVKY LNSLEFPSLP KHKISLKKGV PIMQMRNFNQ
201: KEGLCNGTRL IVTNLGEQVI EAQIVTGTHA GKMVSIPRFI LSPPQSEHPF TLRRQQFPMR VCYAMTIIKN QGQSLKSDVL YLPNPVFSHV QLYVALSRVT
301: SPIGLTILHG DDQKNDEVKN IVYKEFYNDL PKETDPS
Arabidopsis Description
PIF1 helicase [Source:UniProtKB/TrEMBL;Acc:F4KA12]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.