CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70962	Canola	cytosol	81.38	55.07
CDX95954	Canola	cytosol	93.93	29.94
CDY54149	Canola	cytosol	80.16	25.03
CDY50304	Canola	cytosol	81.38	24.81
CDX98536	Canola	cytosol	15.38	5.62
CDX97641	Canola	cytosol	15.38	5.62
CDY45937	Canola	cytosol	13.36	4.82
CDY25875	Canola	plastid	12.96	4.1
CDY25260	Canola	cytosol	10.93	4.09
CDX94250	Canola	cytosol	10.93	4.07
CDY03490	Canola	mitochondrion	10.53	3.66
CDY25732	Canola	plastid	8.1	3.65
CDX76327	Canola	mitochondrion	10.53	3.62
CDY53517	Canola	mitochondrion	8.91	3.24
CDX86848	Canola	mitochondrion	8.5	3.12
CDX67984	Canola	cytosol	8.1	2.94
CDX79332	Canola	cytosol	8.1	2.86
CDY57851	Canola	cytosol	6.88	2.85
CDX69563	Canola	cytosol	7.69	2.82
CDX88555	Canola	cytosol	7.69	2.74
CDY62124	Canola	cytosol	5.26	2.7
CDX87368	Canola	cytosol	7.69	2.7
CDY47150	Canola	cytosol	5.26	2.69
CDY69326	Canola	cytosol	5.26	2.69
CDY11594	Canola	cytosol	6.07	2.68
CDY09880	Canola	cytosol	7.29	2.67
CDY09438	Canola	cytosol	6.07	2.49
CDX85586	Canola	cytosol	6.48	2.46
CDX91026	Canola	cytosol	6.48	2.46
CDY03750	Canola	cytosol	5.26	2.16
CDY50119	Canola	cytosol	3.64	1.74
CDY42585	Canola	cytosol	3.64	1.74
CDY40903	Canola	cytosol	2.02	0.92
CDY46547	Canola	cytosol, plastid	0.81	0.56
CDY52951	Canola	cytosol	0.81	0.56
CDY43527	Canola	cytosol	0.81	0.55
CDX68588	Canola	cytosol	0.81	0.55
CDX87830	Canola	cytosol	0.4	0.47
CDY32868	Canola	cytosol	0.4	0.39
CDX82209	Canola	plastid	0.4	0.3
CDY43920	Canola	cytosol, plastid	0.4	0.3
CDX92751	Canola	cytosol	0.4	0.28
CDY42757	Canola	cytosol	0.4	0.28
CDY11913	Canola	cytosol	0.4	0.28
CDX88578	Canola	cytosol	0.4	0.28
CDY64969	Canola	cytosol	0.0	0.0
CDY70105	Canola	cytosol	0.0	0.0
CDY71921	Canola	mitochondrion	0.0	0.0
Os03t0754800-01	Rice	cytosol	0.0	0.0
CDY11103	Canola	mitochondrion	0.0	0.0
CDY01289	Canola	cytosol	0.0	0.0
CDX68224	Canola	mitochondrion	0.0	0.0
CDX70576	Canola	cytosol	0.0	0.0
CDX73633	Canola	cytosol	0.0	0.0
CDX76326	Canola	plastid	0.0	0.0
CDX78589	Canola	mitochondrion	0.0	0.0
CDX82067	Canola	mitochondrion	0.0	0.0
CDX82210	Canola	plastid	0.0	0.0
CDX93844	Canola	cytosol	0.0	0.0
CDY39283	Canola	plasma membrane, vacuole	0.0	0.0
CDY03491	Canola	plastid	0.0	0.0
CDY05240	Canola	mitochondrion	0.0	0.0
CDY24712	Canola	mitochondrion	0.0	0.0
CDY27532	Canola	cytosol, plastid	0.0	0.0
CDY32414	Canola	extracellular, plasma membrane	0.0	0.0
CDY32415	Canola	cytosol, plastid	0.0	0.0
CDY37306	Canola	cytosol, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY40902	EnsemblPlantsGene:GSBRNA2T00071943001	ProteinID:CDY40902	ProteinID:CDY40902.1	UniParc:UPI0004EDF265	UniProt:A0A078HSS4
MapMan:35.2	:	:	:	:	:

Description

BnaC06g30400DBnaC06g30400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSS4]

Coordinates

chrLK032484:-:10031..11183

Molecular Weight (calculated)

26639.3 Da

IEP (calculated)

4.733

GRAVY (calculated)

-0.463

Length

247 amino acids

Sequence
(BLAST)

001: MIVHGEDETE ESYAGAQLAK EKESSASQVD GVSVGFSGDQ VAGSWIHDKN NRSAADVPVD ESTSQSVRGT PPSVSISLEH KTKLNSISRT QTEGGSEAAS
101: GGTLKSETVG KKAFALQDKL WSIYAAGNTV PIPFLRATDI SPIALLSENM IGGMQQDGNG TVAVEALQEL FTSDPQSKKG RRGQNEMPLP PSVYQRLTSS
201: PPLMNLAQVL AYHRACYEEM PLQEMQATQE QQTIQNLCDT LRTILRL

Best Arabidopsis Sequence Match ( AT1G69220.1 )
(BLAST)

001: MDHNSPKSRR SRKPEPKPDI YSTFVVHSDS DSDQGRDRDK RKAKPEEDEN VDLYATMVYK GDSDGEGEED DDDDSMLPPL LKRLPKDFGG GASLDYDDDD
101: GDESGDFGTM IVKTDRSSHS KKNSPYSSKP RMGVSPRRRA RGGDEESSDE EDEEEDDDDD DGDYGTFVVK SKDKKGKKKD KEIDMTTMGR AVASMQKSNF
201: GGKTRKLDPS SSSSKLHGED NRKMQQQNSK MSTTSLPDSI TREDPTTKYE FLNELGKGSY GSVYKARDLK TSEIVAVKVI SLTEGEEGYE EIRGEIEMLQ
301: QCNHPNVVRY LGSYQGEDYL WIVMEYCGGG SVADLMNVTE EALEEYQIAY ICREALKGLA YLHSIYKVHR DIKGGNILLT EQGEVKLGDF GVAAQLTRTM
401: SKRNTFIGTP HWMAPEVIQE NRYDGKVDVW ALGVSAIEMA EGLPPRSSVH PMRVLFMISI EPAPMLEDKE KWSLVFHDFV AKCLTKEPRL RPTAAEMLKH
501: KFVERCKTGA SAMSPKIEKS RQIRATMALQ AQSVVAPSLE DTSTLGPKSS EELGITVPSK PPQNSTEAPL TSTLNRQHIT GNTVLAGEGG DFGTMIVHGE
601: DETEESDSRS QLVREKESSS SQFEGVPREF PGEELPDSWI HDKKKPPAID LPVEASISQS MQASSSHEHR TKLHNIAGTQ MEGGSDASGS TLKNETVGRK
701: AFALQDKLWS IYAAGNTVPI PFLRATDISP IALLSENMIG GMQQDGNGTV AVEALQELFT SSDPQSKKGR RGQNEMPLPP SVYQRLTTSS SLMNLAQVLA
801: YHRACYEEMP LQELQATQEQ QTIQNLCDTL RTILRL

Arabidopsis Description

SIK1Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:O24527]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.