CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 23758924
nucleus: 23758924

gfp PMID: 23758924 doi

W Liang, B Yang, BJ Yu, Z Zhou, C Li, M Jia, Y Sun, Y Zhang, F Wu, H Zhang, B Wang, MK Deyholos, YQ Jiang

State Key Laboratory of Crop Stress Biology for Arid Areas and College of Life Sciences, Northwest A & F University, Yangling, Shaanxi 712100, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79176
CDX79801
CDX83459
CDX86029
CDX91876
CDX93837
CDX99153
CDY01279
CDY07174
CDY17911
CDY32299
CDY44256
CDY48504
CDY67475
CDY68772

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51660.1	CDX93837	AT1G32380.1	21798944
AT1G51660.1	CDY01279	AT1G32380.1	21798944
AT1G51660.1	CDY32299	AT1G32380.1	21798944
AT1G51660.1	CDY68772	AT1G32380.1	21798944
AT1G51660.1	CDX79801	AT2G43790.1	19513235
AT1G51660.1	CDX83459	AT2G43790.1	19513235
AT1G51660.1	CDY17911	AT2G43790.1	19513235
AT1G51660.1	CDY44256	AT2G43790.1	19513235
AT1G51660.1	CDX79801	AT2G43790.1	21798944
AT1G51660.1	CDX83459	AT2G43790.1	21798944
AT1G51660.1	CDY17911	AT2G43790.1	21798944
AT1G51660.1	CDY44256	AT2G43790.1	21798944
AT1G51660.1	CDX86029	AT3G45640.1	19513235
AT1G51660.1	CDX99153	AT3G45640.1	19513235
AT1G51660.1	CDX86029	AT3G45640.1	21798944
AT1G51660.1	CDX99153	AT3G45640.1	21798944
AT1G51660.1	CDX79176	AT4G01090.1	21798944
AT1G51660.1	CDX91876	AT4G01090.1	21798944
AT1G51660.1	CDY07174	AT4G01090.1	21798944
AT1G51660.1	CDY48504	AT4G01090.1	21798944
AT1G51660.1	CDY67475	AT4G01090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46547	Canola	cytosol, plastid	95.51	95.77
AT1G51660.1	Thale cress	plastid	85.96	83.61
CDX87830	Canola	cytosol	50.28	83.26
CDY43920	Canola	cytosol, plastid	76.12	80.42
CDY32415	Canola	cytosol, plastid	52.25	77.82
CDX82209	Canola	plastid	70.79	76.36
CDY27532	Canola	cytosol, plastid	69.94	76.15
CDY37306	Canola	cytosol, plastid	70.22	75.53
CDX82210	Canola	plastid	63.76	74.18
KRH47006	Soybean	cytosol, plastid	69.1	70.09
Solyc03g123800.1.1	Tomato	nucleus	70.22	69.64
PGSC0003DMT400023739	Potato	plastid	71.91	69.19
HORVU7Hr1G031720.2	Barley	cytosol	51.4	68.54
KRH44646	Soybean	cytosol, plastid	69.38	67.86
GSMUA_Achr9P13590_001	Banana	mitochondrion	43.82	66.38
GSMUA_Achr9P22810_001	Banana	cytosol	23.6	65.62
OQU83236	Sorghum	cytosol	23.31	65.35
CDY32414	Canola	extracellular, plasma membrane	64.04	62.98
GSMUA_Achr4P05870_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	58.71	62.95
TraesCS7B01G059000.1	Wheat	plastid	60.11	62.03
KXG19514	Sorghum	plastid	60.11	61.67
TraesCS7A01G154900.1	Wheat	plastid	60.39	61.6
TraesCS7D01G155100.1	Wheat	plastid	60.39	61.6
Os06t0191300-01	Rice	plasma membrane	58.71	61.11
Zm00001d045064_P001	Maize	extracellular, plasma membrane	59.55	61.1
Zm00001d018326_P001	Maize	plastid	60.67	60.67
Os02t0787300-01	Rice	plasma membrane	62.08	59.89
VIT_09s0018g01820.t01	Wine grape	plastid	70.22	59.52
Zm00001d052066_P001	Maize	plastid	60.67	59.34
OQU85840	Sorghum	plastid	61.52	58.87
HORVU5Hr1G067100.2	Barley	cytosol	38.2	58.62
TraesCS6B01G379500.1	Wheat	cytosol, plastid	61.24	58.6
TraesCS6D01G328800.1	Wheat	cytosol, plastid	60.39	58.42
HORVU0Hr1G038850.2	Barley	cytosol	44.38	53.56
GSMUA_Achr3P05000_001	Banana	plastid	62.92	49.34
CDX82067	Canola	mitochondrion	41.01	47.71
CDY71921	Canola	mitochondrion	41.01	47.71
CDY11103	Canola	mitochondrion	40.17	46.58
CDX68224	Canola	mitochondrion	40.17	46.43
CDY05240	Canola	mitochondrion	38.76	43.53
CDY24712	Canola	mitochondrion	38.2	42.9
Os06t0191500-01	Rice	cytosol, plastid	36.52	42.48
CDX93844	Canola	cytosol	26.4	38.52
CDY32868	Canola	cytosol	26.97	37.5
CDY01289	Canola	cytosol	17.98	36.36
CDY11913	Canola	cytosol	35.11	34.92
CDX88578	Canola	cytosol	35.11	34.92
CDY64969	Canola	cytosol	32.58	34.83
CDX92751	Canola	cytosol	34.27	34.56
CDY42757	Canola	cytosol	34.27	34.37
CDX68588	Canola	cytosol	33.71	32.97
CDY43527	Canola	cytosol	33.43	32.69
CDY39283	Canola	plasma membrane, vacuole	32.02	32.29
CDX78589	Canola	mitochondrion	17.98	28.32
CDY70105	Canola	cytosol	22.75	26.47
CDX70576	Canola	cytosol	12.64	23.81
CDY42585	Canola	cytosol	33.71	23.17
CDY50119	Canola	cytosol	33.71	23.17
CDY40903	Canola	cytosol	28.93	19.0
CDY62124	Canola	cytosol	23.6	17.43
CDY47150	Canola	cytosol	23.6	17.39
CDY69326	Canola	cytosol	23.6	17.39
CDY11594	Canola	cytosol	24.16	15.38
CDY57851	Canola	cytosol	24.16	14.43
CDY09438	Canola	cytosol	23.88	14.12
CDY03750	Canola	cytosol	23.6	13.93
CDX95954	Canola	cytosol	29.49	13.55
CDY54149	Canola	cytosol	30.06	13.53
CDY50304	Canola	cytosol	30.06	13.21
CDX85586	Canola	cytosol	23.6	12.9
CDX91026	Canola	cytosol	23.6	12.9
CDY09880	Canola	cytosol	24.16	12.76
CDY25260	Canola	cytosol	23.6	12.73
CDX94250	Canola	cytosol	23.6	12.65
CDX69563	Canola	cytosol	23.88	12.63
CDX86848	Canola	mitochondrion	23.88	12.61
CDY53517	Canola	mitochondrion	23.88	12.5
CDY45937	Canola	cytosol	23.31	12.13
CDX98536	Canola	cytosol	23.03	12.13
CDX97641	Canola	cytosol	23.03	12.13
CDX67984	Canola	cytosol	23.03	12.04
CDX88555	Canola	cytosol	23.03	11.83
CDX79332	Canola	cytosol	23.03	11.71
CDY03490	Canola	mitochondrion	23.31	11.67
CDX87368	Canola	cytosol	23.03	11.63
CDX76327	Canola	mitochondrion	23.31	11.56
CDY25875	Canola	plastid	23.31	10.64
CDX73633	Canola	cytosol	6.46	10.45
CDY25732	Canola	plastid	10.39	6.75
CDY70962	Canola	cytosol	5.62	5.48
CDY40902	Canola	nucleus	0.56	0.81
CDY03491	Canola	plastid	0.0	0.0
CDX76326	Canola	plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.2.1	Gene3D:3.30.200.20	GO:A0A078IT08	UniProt:A0A078IT08	EnsemblPlants:CDY52951
ProteinID:CDY52951	ProteinID:CDY52951.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00008215001	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24361	PANTHER:PTHR24361:SF319	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0004EDC835	SEG:seg	:

Description

BnaC03g77890DBnaC03g77890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IT08]

Coordinates

chrLK033145:+:45043..46652

Molecular Weight (calculated)

39281.8 Da

IEP (calculated)

9.413

GRAVY (calculated)

-0.430

Length

356 amino acids

Sequence
(BLAST)

001: MKPVQSAPVK SRPRRRPDLS LPLPQRDVSL AVPLPLPPTS GGSSSSSSSS SSSSSAAPKN YSDLERGNRI GSGAGGTVYK VTHRPSSRVY ALKVIYGNHE
101: ENVRRQICRE IEILRDVSHQ NIVKCHEMFD QNGEIQVLLE FMDGGSLENR HVSNERDLAH LSHQILNGLA YLHGRHIVHR DIKPSNLLIN SDKIVKIADF
201: GVSRILAQTM DPCNSSVGTI AYMSPERINT DLNQGRYDGY AGDIWSLGVS ILEFYLGRFP FNVSRQGDWA SLMCAICMSQ PPEAPAAASP DFRHFISCCL
301: QREPGRRMTA TQLLQHPFIR RAVSQGLNRS PQNLHQLLPP PPPRTLSSSS SSSPTT

Best Arabidopsis Sequence Match ( AT1G51660.1 )
(BLAST)

001: MRPIQSPPGV SVPVKSRPRR RPDLTLPLPQ RDVSLAVPLP LPPTSGGSGG SSGSAPSSGG SASSTNTNSS IEAKNYSDLV RGNRIGSGAG GTVYKVIHRP
101: SSRLYALKVI YGNHEETVRR QICREIEILR DVNHPNVVKC HEMFDQNGEI QVLLEFMDKG SLEGAHVWKE QQLADLSRQI LSGLAYLHSR HIVHRDIKPS
201: NLLINSAKNV KIADFGVSRI LAQTMDPCNS SVGTIAYMSP ERINTDLNQG KYDGYAGDIW SLGVSILEFY LGRFPFPVSR QGDWASLMCA ICMSQPPEAP
301: ATASPEFRHF ISCCLQREPG KRRSAMQLLQ HPFILRASPS QNRSPQNLHQ LLPPPRPLSS SSSPTT

Arabidopsis Description

MKK4MKK4 [Source:UniProtKB/TrEMBL;Acc:A0A178WCC0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.