CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70737
CDX84994
CDX84995
CDX87453
CDY03849
CDY24397
CDY24398
CDY24399
CDY31621
CDY35849
CDY36104
CDY42101
CDY51132
CDY70440

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32380.1	CDX70737	AT1G25490.1	21798944
AT1G32380.1	CDX84994	AT1G25490.1	21798944
AT1G32380.1	CDX84995	AT1G25490.1	21798944
AT1G32380.1	CDX87453	AT1G25490.1	21798944
AT1G32380.1	CDY03849	AT1G25490.1	21798944
AT1G32380.1	CDY24397	AT1G25490.1	21798944
AT1G32380.1	CDY24398	AT1G25490.1	21798944
AT1G32380.1	CDY24399	AT1G25490.1	21798944
AT1G32380.1	CDY31621	AT1G25490.1	21798944
AT1G32380.1	CDY35849	AT1G25490.1	21798944
AT1G32380.1	CDY36104	AT1G25490.1	21798944
AT1G32380.1	CDY42101	AT1G25490.1	21798944
AT1G32380.1	CDY51132	AT1G25490.1	21798944
AT1G32380.1	CDY70440	AT1G25490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93837	Canola	plastid	99.24	99.24
AT1G32380.1	Thale cress	plastid	95.72	95.0
CDY32299	Canola	plastid	95.97	93.84
CDY68772	Canola	endoplasmic reticulum, golgi	74.31	88.86
CDY31684	Canola	plastid	86.65	86.22
CDX84209	Canola	plastid	86.4	85.96
GSMUA_Achr11P...	Banana	cytosol, plastid	69.02	81.31
GSMUA_Achr2P12090_001	Banana	cytosol, mitochondrion	67.0	80.12
KRH57590	Soybean	nucleus	78.34	79.13
Solyc08g077200.2.1	Tomato	plastid	78.84	78.84
PGSC0003DMT400062265	Potato	plastid	78.59	78.59
KRH04308	Soybean	plastid	77.58	75.86
VIT_02s0012g00530.t01	Wine grape	plastid	75.57	75.57
HORVU6Hr1G015080.5	Barley	mitochondrion	69.77	74.06
CDY30476	Canola	plastid	71.28	70.57
Os02t0127700-02	Rice	plastid	70.28	70.45
PGSC0003DMT400068395	Potato	plastid	70.78	70.25
Solyc06g061040.2.1	Tomato	plastid	71.28	70.22
CDY23440	Canola	plastid	67.76	70.05
Zm00001d015115_P001	Maize	plastid	69.77	69.42
EES06216	Sorghum	plastid	69.27	69.1
TraesCS6A01G088200.2	Wheat	nucleus	69.52	68.49
TraesCS6B01G110600.1	Wheat	plastid	69.52	68.32
TraesCSU01G018200.1	Wheat	plastid	69.02	67.99
CDY42811	Canola	cytosol	17.13	22.01
CDX83511	Canola	cytosol	18.89	21.93
CDY60199	Canola	cytosol	18.64	21.7
CDX79840	Canola	cytosol	18.64	21.57
CDY19314	Canola	plastid	19.14	18.45
CDX97905	Canola	plastid	18.39	17.85

Protein Annotations

KEGG:00030+2.7.6.1	KEGG:00230+2.7.6.1	Gene3D:3.40.50.2020	MapMan:50.2.7	GO:A0A078EKL5	EnsemblPlants:CDY01279
ProteinID:CDY01279	ProteinID:CDY01279.1	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004749
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009116
GO:GO:0009156	GO:GO:0009165	GO:GO:0009987	GO:GO:0016740	GO:GO:0044249	EnsemblPlantsGene:GSBRNA2T00111460001
HAMAP:MF_00583_B	PFAM:PF13793	PFAM:PF14572	InterPro:PRTase-like	InterPro:PRibTrfase_dom	InterPro:PRib_PP_synth_CS
ScanProsite:PS00114	PANTHER:PTHR10210	PANTHER:PTHR10210:SF54	InterPro:Pribosyltran_N	InterPro:Rib-P_diPkinase	InterPro:Rib-P_diPkinase_bac
SMART:SM01400	SUPFAM:SSF53271	TIGRFAMs:TIGR01251	UniPathway:UPA00087	UniParc:UPI0004EE088B	SEG:seg

Description

BnaC05g24530D

Coordinates

chrLK031925:-:998547..1001070

Molecular Weight (calculated)

42914.9 Da

IEP (calculated)

8.462

GRAVY (calculated)

0.088

Length

397 amino acids

Sequence
(BLAST)

001: MASMALTSPP GVKIPSYMAA SSSSSLFSRS SISFRTVESR SRICVSSSAK CNLNGNARIP IINETTLPKY FDSSRLEKSA SRANTKLKLF SGTANPALSQ
101: EIAWYMGLEL GKISIKRFAD GEVYVQLKES VRGCDVFLVQ PTCTPTNENL MELLIMVDAC RRASAKKVTA VIPYFGYARA DRKTQGRESI AAKLVANLIT
201: EAGADRVLAC DLHSGQSMGY FDIPVDHVYC QPVILDYLAS KSISSKDLVV VSPDVGGVAR ARAFAKKLSD APLAIVDKRR HGHNVAEVMN LIGDVKGKVA
301: VMVDDMIDTA GTIVKGAALL HEEGAREVYA CCTHAVFSPP AIERLSSGLL QEVIVTNTLP VAEKNYFPQL TILSVANLLG ETIWRVHDDS SVSSIFL

Best Arabidopsis Sequence Match ( AT1G32380.1 )
(BLAST)

001: MASLALTSPP SVKIPSYLSS SSSSLFSRSS ISFRTTESRS RICVSGYAKC NLPKALNGNA RVPIINETTI PKFFDSSRLE KSVSRNNTKL KLFSGTANPA
101: LSQEIAWYMG LELGKVSIKR FADGEIYVQL KESVRGCDVF LVQPTCTPTN ENLMELLIMV DACRRASAKK VTAVIPYFGY ARADRKTQGR ESIAAKLVAN
201: LITEAGADRV LACDLHSGQS MGYFDIPVDH VYCQPVILDY LASKSISSED LVVVSPDVGG VARARAFAKK LSDAPLAIVD KRRHGHNVAE VMNLIGDVKG
301: KVAVMVDDII DTAGTIVKGA ALLHEEGARE VYACCTHAVF SPPAIERLSS GLLQEVIVTN TLPVAEKNYF PQLTILSVAN LLGETIWRVH DDSSVSSIFL

Arabidopsis Description

PRS2Ribose-phosphate pyrophosphokinase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42583]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.