CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04308	Soybean	plastid	97.46	94.33
CDY68772	Canola	endoplasmic reticulum, golgi	69.47	82.23
GSMUA_Achr11P...	Banana	cytosol, plastid	70.48	82.2
GSMUA_Achr2P12090_001	Banana	cytosol, mitochondrion	68.7	81.33
PGSC0003DMT400062265	Potato	plastid	79.9	79.09
Bra005344.1-P	Field mustard	plastid	80.15	78.95
CDX84209	Canola	plastid	80.15	78.95
CDY31684	Canola	plastid	80.15	78.95
AT2G35390.2	Thale cress	plastid	80.92	78.91
Solyc08g077200.2.1	Tomato	plastid	79.64	78.84
Bra023263.1-P	Field mustard	plastid	78.88	78.48
CDY01279	Canola	plastid	79.13	78.34
CDX93837	Canola	plastid	79.13	78.34
VIT_02s0012g00530.t01	Wine grape	plastid	79.13	78.34
AT1G32380.1	Thale cress	plastid	79.13	77.75
CDY32299	Canola	plastid	78.88	76.35
HORVU6Hr1G015080.5	Barley	mitochondrion	71.25	74.87
KRH66354	Soybean	nucleus	75.06	73.02
Os02t0127700-02	Rice	plastid	73.54	72.98
KRH48933	Soybean	plastid	74.55	72.89
EES06216	Sorghum	plastid	72.77	71.86
Zm00001d015115_P001	Maize	plastid	72.52	71.43
PGSC0003DMT400068395	Potato	plastid	72.26	71.0
TraesCS6B01G110600.1	Wheat	plastid	72.52	70.54
Solyc06g061040.2.1	Tomato	plastid	72.26	70.47
TraesCS6A01G088200.2	Wheat	nucleus	72.26	70.47
TraesCSU01G018200.1	Wheat	plastid	72.26	70.47
Bra010159.1-P	Field mustard	plastid	27.99	48.25
KRH46053	Soybean	cytosol, nucleus	19.34	23.75
KRG98919	Soybean	cytosol	19.08	23.44
KRH69621	Soybean	plastid	19.85	19.12
KRH74537	Soybean	endoplasmic reticulum, plastid	19.59	18.87

Protein Annotations

KEGG:00030+2.7.6.1	KEGG:00230+2.7.6.1	EntrezGene:100807743	Gene3D:3.40.50.2020	MapMan:50.2.7	EMBL:ACUP02002858
EnsemblPlantsGene:GLYMA_05G070500	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004749	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009116	GO:GO:0009156
GO:GO:0009165	GO:GO:0009987	GO:GO:0016740	GO:GO:0044249	UniProt:I1K115	EnsemblPlants:KRH57590
ProteinID:KRH57590	ProteinID:KRH57590.1	HAMAP:MF_00583_B	PFAM:PF13793	PFAM:PF14572	InterPro:PRTase-like
InterPro:PRibTrfase_dom	InterPro:PRib_PP_synth_CS	ScanProsite:PS00114	PANTHER:PTHR10210	PANTHER:PTHR10210:SF54	InterPro:Pribosyltran_N
InterPro:Rib-P_diPkinase	InterPro:Rib-P_diPkinase_bac	SMART:SM01400	SUPFAM:SSF53271	TIGRFAMs:TIGR01251	UniParc:UPI0001CA9498
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:7420686..7425299

Molecular Weight (calculated)

42694.6 Da

IEP (calculated)

8.212

GRAVY (calculated)

0.018

Length

393 amino acids

Sequence
(BLAST)

001: MASSLLQPSS SSSLFAGTLR TLDFVDHSRA RISAPYTVKC DMSESSNFVN GKPIIPVLNE RTLPKFMESA REAKAVSRNS NRLKLFSGTA NPTLSQEIAR
101: YMGLELGKIS IKRFADGEIY VQLQESVRGC NVYLIQPTCP PANENLMELK IMIDACRRAS AKNITAVIPY FGYARADRKT QGRESIAAKL VANLITKAGA
201: DRVLACDLHS GQSMGYFDIP VDHVHCQPVI LDYLASKTIS SSDLVVVSPD VGGVARARAF AKKLSDAPLA IVDKRRHGHN VAEVMNLIGD VKGKVAVMVD
301: DMIDTAGTIA KGAALLHEEG AREVYACCTH AVFSPPAIER LSGGLFHEVI ITNTIPVAEK NYFPQLTILT VANLLGETIW RVHDDSSVSS IFQ

Best Arabidopsis Sequence Match ( AT2G35390.2 )
(BLAST)

001: MASLGLSFPP AAKTPTYLAS SSSTFFSNSS LSVRTSQFRS RNSVFACVKC DMPESLNVGN GNPSIPIINE RTLPKFLESA RMEKSVNRTN TRLKLFSGTA
101: NPALAQEIAW YMGLDLGKVN IKRFADGEIY VQLQESVRGC DVYLVQPTCT PTNENLMELL IMVDACRRAS AKKVTAVIPY FGYARADRKT QGRESIAAKL
201: VANLITEAGA DRVLACDLHS GQSMGYFDIP VDHVYCQPVI LDYLASKSIP SEDLVVVSPD VGGVARARAF AKKLSDAPLA IVDKRRSGHN VAEVMNLIGD
301: VRGKVAIMVD DMIDTAGTIV KGAALLHQEG AREVYACCTH AVFSPPAIER LSGGLLQEVI VTNTLPVAEK NYFPQLTILS VANLLGETIW RVHDDSSVSS
401: IFL

Arabidopsis Description

PRS1Ribose-phosphate pyrophosphokinase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42581]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.