CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70737
CDX84994
CDX84995
CDX87453
CDY03849
CDY24397
CDY24398
CDY24399
CDY31621
CDY35849
CDY36104
CDY42101
CDY51132
CDY70440

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32380.1	CDX70737	AT1G25490.1	21798944
AT1G32380.1	CDX84994	AT1G25490.1	21798944
AT1G32380.1	CDX84995	AT1G25490.1	21798944
AT1G32380.1	CDX87453	AT1G25490.1	21798944
AT1G32380.1	CDY03849	AT1G25490.1	21798944
AT1G32380.1	CDY24397	AT1G25490.1	21798944
AT1G32380.1	CDY24398	AT1G25490.1	21798944
AT1G32380.1	CDY24399	AT1G25490.1	21798944
AT1G32380.1	CDY31621	AT1G25490.1	21798944
AT1G32380.1	CDY35849	AT1G25490.1	21798944
AT1G32380.1	CDY36104	AT1G25490.1	21798944
AT1G32380.1	CDY42101	AT1G25490.1	21798944
AT1G32380.1	CDY51132	AT1G25490.1	21798944
AT1G32380.1	CDY70440	AT1G25490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, plastid	77.41	76.26
GSMUA_Achr2P12090_001	Banana	cytosol, mitochondrion	76.2	76.2
CDX93837	Canola	plastid	88.86	74.31
CDY01279	Canola	plastid	88.86	74.31
AT1G32380.1	Thale cress	plastid	87.35	72.5
CDY32299	Canola	plastid	88.55	72.41
CDX84209	Canola	plastid	85.84	71.43
CDY31684	Canola	plastid	85.84	71.43
KRH57590	Soybean	nucleus	82.23	69.47
HORVU6Hr1G015080.5	Barley	mitochondrion	77.11	68.45
PGSC0003DMT400062265	Potato	plastid	80.42	67.25
Solyc08g077200.2.1	Tomato	plastid	80.42	67.25
VIT_02s0012g00530.t01	Wine grape	plastid	79.82	66.75
KRH04308	Soybean	plastid	81.63	66.75
Os02t0127700-02	Rice	plastid	77.71	65.15
CDY30476	Canola	plastid	78.31	64.84
CDY23440	Canola	plastid	74.4	64.32
EES06216	Sorghum	plastid	77.11	64.32
Zm00001d015115_P001	Maize	plastid	76.81	63.91
TraesCS6A01G088200.2	Wheat	nucleus	77.41	63.77
TraesCS6B01G110600.1	Wheat	plastid	77.41	63.61
TraesCSU01G018200.1	Wheat	plastid	76.81	63.28
PGSC0003DMT400068395	Potato	plastid	75.6	62.75
Solyc06g061040.2.1	Tomato	plastid	75.6	62.28
Bra010159.1-P	Field mustard	plastid	36.45	53.07
CDY60199	Canola	cytosol	21.08	20.53
CDX83511	Canola	cytosol	21.08	20.47
CDX79840	Canola	cytosol	21.08	20.41
CDY42811	Canola	cytosol	18.67	20.06
CDY19314	Canola	plastid	22.89	18.45
CDX97905	Canola	plastid	22.29	18.09

Protein Annotations

KEGG:00030+2.7.6.1	KEGG:00230+2.7.6.1	Gene3D:3.40.50.2020	MapMan:50.2.7	GO:A0A078JTP0	UniProt:A0A078JTP0
EnsemblPlants:CDY68772	ProteinID:CDY68772	ProteinID:CDY68772.1	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004749	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009116	GO:GO:0009156	GO:GO:0009165	GO:GO:0009987	GO:GO:0016740	GO:GO:0044249
EnsemblPlantsGene:GSBRNA2T00077616001	HAMAP:MF_00583_B	PFAM:PF13793	PFAM:PF14572	InterPro:PRTase-like	InterPro:PRibTrfase_dom
InterPro:PRib_PP_synth_CS	ScanProsite:PS00114	PANTHER:PTHR10210	PANTHER:PTHR10210:SF54	InterPro:Pribosyltran_N	InterPro:Rib-P_diPkinase
InterPro:Rib-P_diPkinase_bac	SMART:SM01400	SUPFAM:SSF53271	SignalP:SignalP-noTM	TIGRFAMs:TIGR01251	UniPathway:UPA00087
UniParc:UPI0004EEF64D	SEG:seg	:	:	:	:

Description

BnaCnng60440DBnaCnng60440D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JTP0]

Coordinates

chrLK037935:+:2..1568

Molecular Weight (calculated)

35687.4 Da

IEP (calculated)

6.393

GRAVY (calculated)

0.335

Length

332 amino acids

Sequence
(BLAST)

001: SLSLSLSLSL SLSLSLSLSL SLSLSLSLSL SLSVKEIAWY MGLELGKISI KRFADGEVYV QLKESVRGCD VFLVQPTCTP TNENLMELLI MVDACRRASA
101: KKVTAVIPYF GYARADRKAQ GRESIAAKLV ANLITEAGAD RVLACDLHSG QSMGYFDVPV DHVYCQPVIL DYLASKSISS KDLVVVSPDV GGVARARAFA
201: KKLSDAPLAI VDKRRHGHNV AEVMNLIGDV KGKVAVMVDD MIDTAGTIVK GAALLHEEGA CEVYACCTHA VFSPPAIERL SSGLLQEVIV TNTLPVAEKN
301: YFPQLTILSV ANLLGETIWR VHDDSSVSSI FL

Best Arabidopsis Sequence Match ( AT1G32380.2 )
(BLAST)

001: MGLELGKVSI KRFADGEIYV QLKESVRGCD VFLVQPTCTP TNENLMELLI MVDACRRASA KKVTAVIPYF GYARADRKTQ GRESIAAKLV ANLITEAGAD
101: RVLACDLHSG QSMGYFDIPV DHVYCQPVIL DYLASKSISS EDLVVVSPDV GGVARARAFA KKLSDAPLAI VDKRRHGHNV AEVMNLIGDV KGKVAVMVDD
201: IIDTAGTIVK GAALLHEEGA REVYACCTHA VFSPPAIERL SSGLLQEVIV TNTLPVAEKN YFPQLTILSV ANLLGETIWR VHDDSSVSSI FL

Arabidopsis Description

PRS2Ribose-phosphate pyrophosphokinase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42583]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.