CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68515
CDX79840
CDX83068
CDX83511
CDY42811
CDY60199
CDY69935

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42910.1	CDX79840	AT2G42910.1	21798944
AT2G42910.1	CDX83511	AT2G42910.1	21798944
AT2G42910.1	CDY42811	AT2G42910.1	21798944
AT2G42910.1	CDY60199	AT2G42910.1	21798944
AT2G42910.1	CDX68515	AT3G49160.1	21798944
AT2G42910.1	CDX83068	AT3G49160.1	21798944
AT2G42910.1	CDY69935	AT3G49160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004730.1-P	Field mustard	cytosol	100.0	100.0
CDX83511	Canola	cytosol	93.0	93.27
CDY60199	Canola	cytosol	92.71	93.26
AT2G42910.1	Thale cress	cytosol	90.38	91.99
CDY42811	Canola	cytosol	81.63	90.61
PGSC0003DMT400054829	Potato	cytosol	76.97	83.54
Solyc10g007760.2.1	Tomato	extracellular, nucleus, plastid	77.55	82.61
PGSC0003DMT400044713	Potato	cytosol	76.09	81.56
Solyc07g056330.2.1	Tomato	cytosol, nucleus	75.8	81.25
VIT_12s0142g00090.t01	Wine grape	cytosol	76.09	80.06
KRG98919	Soybean	cytosol	74.64	80.0
KRH46053	Soybean	cytosol, nucleus	73.76	79.06
Os02t0714600-01	Rice	cytosol, extracellular, nucleus, plasma membrane	74.05	78.15
Zm00001d017833_P001	Maize	cytosol, extracellular, mitochondrion	73.47	77.54
GSMUA_Achr8P25470_001	Banana	cytosol, golgi, mitochondrion	72.01	77.43
GSMUA_Achr9P27600_001	Banana	cytosol	70.85	76.18
Zm00001d051634_P001	Maize	cytosol	72.01	76.0
EES07369	Sorghum	cytosol	72.01	74.4
TraesCS6D01G259800.1	Wheat	golgi, plastid, unclear	72.89	60.39
TraesCS6B01G308200.1	Wheat	plastid	72.89	60.24
TraesCS6A01G279400.1	Wheat	plastid	72.89	59.81
CDX97905	Canola	plastid	66.76	55.99
CDY19314	Canola	plastid	66.47	55.34
CDY68772	Canola	endoplasmic reticulum, golgi	20.41	21.08
CDY01279	Canola	plastid	21.57	18.64
CDX93837	Canola	plastid	21.57	18.64
CDY31684	Canola	plastid	21.57	18.55
CDX84209	Canola	plastid	21.57	18.55
CDY32299	Canola	plastid	21.57	18.23
CDY30476	Canola	plastid	20.41	17.46
CDY23440	Canola	plastid	19.24	17.19

Protein Annotations

KEGG:00030+2.7.6.1	KEGG:00230+2.7.6.1	Gene3D:3.40.50.2020	MapMan:4.1.1.2.1	GO:A0A078CSM2	EnsemblPlants:CDX79840
ProteinID:CDX79840	ProteinID:CDX79840.1	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009116
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00132683001	PFAM:PF00156	PFAM:PF13793	InterPro:PRTase-like	InterPro:PRibTrfase_dom
PANTHER:PTHR10210	PANTHER:PTHR10210:SF34	InterPro:Pribosyltran_N	SMART:SM01400	SUPFAM:SSF53271	UniPathway:UPA00087
UniParc:UPI0002547A73	SEG:seg	:	:	:	:

Description

BnaA05g03160D

Coordinates

chrLK031819:-:434495..436389

Molecular Weight (calculated)

38263.9 Da

IEP (calculated)

6.348

GRAVY (calculated)

0.003

Length

343 amino acids

Sequence
(BLAST)

001: MSENAATNNN NNNIMEKNQI VKEAIVSELQ KKKVHLFYCL ECEELARNIA AESDHITLQS INWRSFADGF PNLFINNAHQ IRGQHVAFLA SFSSPAVIFE
101: QISVIYLLPR LFVASFTLVL PFFPTGSFER MEEEGDVATA FTMARIVSNI PISRGGPTSV VIYDIHALQE RFYFADQVLP LFETGIPLLT KRLQQIPETE
201: KVIVAFPDDG AWKRFHKLLD QYPTVVCTKV REGDKRIVRL KEGNPSGCHV VIVDDLVQSG GTLIECQKVL AAHGAAKVSA YVTHGVFPNS SWERFTHKNN
301: GVEEAFAYFW ITDSCPQTVK SIGNKAPFEV LSLAGSIADA LQI

Best Arabidopsis Sequence Match ( AT2G42910.1 )
(BLAST)

001: MSENAANNIM ETKICTDAIV SELQKKKVHL FYCLECEELA RNIAAESDHI TLQSINWRSF ADGFPNLFIN NAHDIRGQHV AFLASFSSPA VIFEQISVIY
101: LLPRLFVASF TLVLPFFPTG SFERMEEEGD VATAFTMARI VSNIPISRGG PTSVVIYDIH ALQERFYFAD QVLPLFETGI PLLTKRLQQL PETEKVIVAF
201: PDDGAWKRFH KLLDHYPTVV CTKVREGDKR IVRLKEGNPA GCHVVIVDDL VQSGGTLIEC QKVLAAHGAV KVSAYVTHGV FPKSSWERFT HKKNGLEEAF
301: AYFWITDSCP QTVKAIGNKA PFEVLSLAGS IADALQI

Arabidopsis Description

PRS4Ribose-phosphate pyrophosphokinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q680A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.