Factsheet for Zm00001d017833_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017833_P001
Zm00001d051634_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42910.1	Zm00001d017833_P001	AT2G42910.1	21798944
AT2G42910.1	Zm00001d051634_P001	AT2G42910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051634_P001	Maize	cytosol	95.69	95.69
EES07369	Sorghum	cytosol	92.92	90.96
Os02t0714600-01	Rice	cytosol, extracellular, nucleus, plasma membrane	89.85	89.85
GSMUA_Achr8P25470_001	Banana	cytosol, golgi, mitochondrion	81.23	82.76
GSMUA_Achr9P27600_001	Banana	cytosol	80.62	82.13
PGSC0003DMT400054829	Potato	cytosol	74.77	76.9
VIT_12s0142g00090.t01	Wine grape	cytosol	76.92	76.69
PGSC0003DMT400044713	Potato	cytosol	75.38	76.56
Solyc07g056330.2.1	Tomato	cytosol, nucleus	74.77	75.94
AT2G42910.1	Thale cress	cytosol	78.15	75.37
Solyc10g007760.2.1	Tomato	extracellular, nucleus, plastid	74.46	75.16
Bra000280.1-P	Field mustard	cytosol	77.54	74.56
KRG98919	Soybean	cytosol	72.62	73.75
CDY60199	Canola	cytosol	77.23	73.61
CDX79840	Canola	cytosol	77.54	73.47
Bra004730.1-P	Field mustard	cytosol	77.54	73.47
CDX83511	Canola	cytosol	77.23	73.39
KRH46053	Soybean	cytosol, nucleus	72.0	73.12
CDY42811	Canola	cytosol	68.0	71.52
TraesCS6D01G259800.1	Wheat	golgi, plastid, unclear	87.08	68.36
TraesCS6B01G308200.1	Wheat	plastid	87.08	68.19
TraesCS6A01G279400.1	Wheat	plastid	86.77	67.46
Zm00001d043600_P001	Maize	plastid	46.46	42.18
Zm00001d046742_P002	Maize	plastid	22.77	18.69
Zm00001d015115_P001	Maize	plastid	21.54	17.54
Zm00001d027256_P001	Maize	cytosol, mitochondrion	13.85	13.31

Protein Annotations

KEGG:00030+2.7.6.1	KEGG:00230+2.7.6.1	Gene3D:3.40.50.2020	MapMan:4.1.1.2.1	ProteinID:AQK74209.1	UniProt:B6TXX0
EMBL:EU969835	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004749	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009116	GO:GO:0009165
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	PFAM:PF00156	PFAM:PF13793
InterPro:PRTase-like	InterPro:PRibTrfase_dom	PANTHER:PTHR10210	PANTHER:PTHR10210:SF34	InterPro:Pribosyltran_N	SMART:SM01400
SUPFAM:SSF53271	UniParc:UPI000182E50D	EnsemblPlantsGene:Zm00001d017833	EnsemblPlants:Zm00001d017833_P001	EnsemblPlants:Zm00001d017833_T001	SEG:seg

Description

Ribose-phosphate pyrophosphokinase 4

Coordinates

chr5:+:208259089..208262363

Molecular Weight (calculated)

36195.8 Da

IEP (calculated)

7.093

GRAVY (calculated)

0.109

Length

325 amino acids

Sequence
(BLAST)

001: MEVVVAAKQK AKKHIHLFYC SECEELALKI AASSDAIELQ SINWRSFDDG FPNLFINKAH DIRGQHVAFL ASFSSPSVIF EQISVIFALP KLFIASFTLV
101: LPFFPTGSFE RVEEEGDVAT AFTLARILSM IPKSRGGPTS VVIYDIHALQ ERFYFGDDVL PCFETGIPLL LQRLRQLPDA ENITIAFPDD GAWKRFHKLL
201: QHFPMIVCNK VREGDKRIVR IKEGLPEGRH VVIVDDLVQS GGTLRECQKV LALHGAAKVS AYVTHAVFPK QSYERFMASS SAGPGDRFAY FWITDSCPHT
301: VKAIGQRPPF EVLSLAGSIA DALQI

Best Arabidopsis Sequence Match ( AT2G42910.1 )
(BLAST)

001: MSENAANNIM ETKICTDAIV SELQKKKVHL FYCLECEELA RNIAAESDHI TLQSINWRSF ADGFPNLFIN NAHDIRGQHV AFLASFSSPA VIFEQISVIY
101: LLPRLFVASF TLVLPFFPTG SFERMEEEGD VATAFTMARI VSNIPISRGG PTSVVIYDIH ALQERFYFAD QVLPLFETGI PLLTKRLQQL PETEKVIVAF
201: PDDGAWKRFH KLLDHYPTVV CTKVREGDKR IVRLKEGNPA GCHVVIVDDL VQSGGTLIEC QKVLAAHGAV KVSAYVTHGV FPKSSWERFT HKKNGLEEAF
301: AYFWITDSCP QTVKAIGNKA PFEVLSLAGS IADALQI

Arabidopsis Description

PRS4Ribose-phosphate pyrophosphokinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q680A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.