Factsheet for GSMUA_Achr9P27600_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P10730_001
GSMUA_Achr8P25470_001
GSMUA_Achr9P27600_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42910.1	GSMUA_Achr8P25470_001	AT2G42910.1	21798944
AT2G42910.1	GSMUA_Achr9P27600_001	AT2G42910.1	21798944
AT2G42910.1	GSMUA_Achr7P10730_001	AT3G49160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P25470_001	Banana	cytosol, golgi, mitochondrion	90.6	90.6
Os02t0714600-01	Rice	cytosol, extracellular, nucleus, plasma membrane	84.01	82.46
Zm00001d017833_P001	Maize	cytosol, extracellular, mitochondrion	82.13	80.62
VIT_12s0142g00090.t01	Wine grape	cytosol	81.5	79.75
Zm00001d051634_P001	Maize	cytosol	80.56	79.08
EES07369	Sorghum	cytosol	81.82	78.61
PGSC0003DMT400054829	Potato	cytosol	77.74	78.48
PGSC0003DMT400044713	Potato	cytosol	77.74	77.5
Solyc07g056330.2.1	Tomato	cytosol, nucleus	76.8	76.56
Solyc10g007760.2.1	Tomato	extracellular, nucleus, plastid	77.12	76.4
KRG98919	Soybean	cytosol	76.49	76.25
GSMUA_Achr2P14200_001	Banana	cytosol	72.41	76.24
KRH46053	Soybean	cytosol, nucleus	75.24	75.0
AT2G42910.1	Thale cress	cytosol	78.37	74.18
Bra000280.1-P	Field mustard	cytosol	77.74	73.37
CDX83511	Canola	cytosol	77.43	72.22
CDY60199	Canola	cytosol	76.18	71.26
CDX79840	Canola	cytosol	76.18	70.85
Bra004730.1-P	Field mustard	cytosol	76.18	70.85
CDY42811	Canola	cytosol	67.4	69.58
TraesCS6D01G259800.1	Wheat	golgi, plastid, unclear	82.45	63.53
TraesCS6B01G308200.1	Wheat	plastid	82.45	63.37
TraesCS6A01G279400.1	Wheat	plastid	82.45	62.92
GSMUA_Achr11P...	Banana	cytosol, plastid	20.06	18.99
GSMUA_Achr2P12090_001	Banana	cytosol, mitochondrion	19.75	18.98
GSMUA_Achr3P03780_001	Banana	endoplasmic reticulum, vacuole	21.94	18.57

Protein Annotations

KEGG:00030+2.7.6.1	KEGG:00230+2.7.6.1	Gene3D:3.40.50.2020	MapMan:4.1.1.2.1	ncoils:Coil	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0004749	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009116	GO:GO:0009165	GO:GO:0009987	GO:GO:0016740
EnsemblPlantsGene:GSMUA_Achr9G27600_001	EnsemblPlants:GSMUA_Achr9P27600_001	EnsemblPlants:GSMUA_Achr9T27600_001	UniProt:M0U417	PFAM:PF00156	PFAM:PF13793
InterPro:PRTase-like	InterPro:PRibTrfase_dom	PANTHER:PTHR10210	PANTHER:PTHR10210:SF34	InterPro:Pribosyltran_N	SMART:SM01400
SUPFAM:SSF53271	TMHMM:TMhelix	UniParc:UPI00029686F7	:	:	:

Description

Ribose-phosphate pyrophosphokinase 4 [Source:GMGC_GENE;Acc:GSMUA_Achr9G27600_001]

Coordinates

chr9:+:31834788..31841388

Molecular Weight (calculated)

35718.1 Da

IEP (calculated)

7.309

GRAVY (calculated)

0.020

Length

319 amino acids

Sequence
(BLAST)

001: MAMRTKKQVN LFYCSESEEL ARKVADQSDA IQLRTISWRN FDDGFPNLFI NNAHDIRGQH VAFLASFSSP GVIFEQISAI FALPKLFIAS FTLVLPFFPT
101: GSFERMEEEG DVATAFTMAR ILSMIPKSRG GPTSIVIYDI HALQERFYFG DDVLPCFETG IPLLLQRLRK LPDADNVTIA FPDDGAWKRF HKQLMHFPMI
201: VCAKVREGDK RIVQIKEGNP AGRHVVIVDD LVQSGGTLIE CQKVLTAHGA GKVSAYVTHG VFPKRSWERF VHIKAERSDH RFANFWITDS CPLTVKAIAN
301: EAPFEVLSLA GSIADALQV

Best Arabidopsis Sequence Match ( AT2G42910.1 )
(BLAST)

001: MSENAANNIM ETKICTDAIV SELQKKKVHL FYCLECEELA RNIAAESDHI TLQSINWRSF ADGFPNLFIN NAHDIRGQHV AFLASFSSPA VIFEQISVIY
101: LLPRLFVASF TLVLPFFPTG SFERMEEEGD VATAFTMARI VSNIPISRGG PTSVVIYDIH ALQERFYFAD QVLPLFETGI PLLTKRLQQL PETEKVIVAF
201: PDDGAWKRFH KLLDHYPTVV CTKVREGDKR IVRLKEGNPA GCHVVIVDDL VQSGGTLIEC QKVLAAHGAV KVSAYVTHGV FPKSSWERFT HKKNGLEEAF
301: AYFWITDSCP QTVKAIGNKA PFEVLSLAGS IADALQI

Arabidopsis Description

PRS4Ribose-phosphate pyrophosphokinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q680A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.