Factsheet for Os02t0714600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, nucleus, cytosol

Predictor Summary:

cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 19038476
nucleus: 26035336
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 19038476 doi

XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0714600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42910.1	Os02t0714600-01	AT2G42910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017833_P001	Maize	cytosol, extracellular, mitochondrion	89.85	89.85
Zm00001d051634_P001	Maize	cytosol	88.62	88.62
EES07369	Sorghum	cytosol	88.92	87.05
GSMUA_Achr8P25470_001	Banana	cytosol, golgi, mitochondrion	84.62	86.21
GSMUA_Achr9P27600_001	Banana	cytosol	82.46	84.01
VIT_12s0142g00090.t01	Wine grape	cytosol	79.08	78.83
PGSC0003DMT400054829	Potato	cytosol	76.31	78.48
Solyc07g056330.2.1	Tomato	cytosol, nucleus	76.31	77.5
PGSC0003DMT400044713	Potato	cytosol	76.0	77.19
KRH46053	Soybean	cytosol, nucleus	75.69	76.88
KRG98919	Soybean	cytosol	75.38	76.56
Solyc10g007760.2.1	Tomato	extracellular, nucleus, plastid	75.69	76.4
AT2G42910.1	Thale cress	cytosol	78.77	75.96
Bra000280.1-P	Field mustard	cytosol	78.46	75.44
CDX83511	Canola	cytosol	78.77	74.85
CDY60199	Canola	cytosol	78.15	74.49
CDX79840	Canola	cytosol	78.15	74.05
Bra004730.1-P	Field mustard	cytosol	78.15	74.05
CDY42811	Canola	cytosol	69.54	73.14
TraesCS6D01G259800.1	Wheat	golgi, plastid, unclear	89.85	70.53
TraesCS6B01G308200.1	Wheat	plastid	89.85	70.36
TraesCS6A01G279400.1	Wheat	plastid	89.54	69.62
Os01t0723600-01	Rice	plastid	72.62	57.7
Os03t0100040-01	Rice	plastid	21.54	18.32
Os02t0127700-02	Rice	plastid	21.85	17.93
Os06t0617800-01	Rice	plastid	21.23	17.83

Protein Annotations

KEGG:00030+2.7.6.1	KEGG:00230+2.7.6.1	Gene3D:3.40.50.2020	MapMan:4.1.1.2.1	EntrezGene:4330515	EMBL:AK103643
EMBL:AK104867	ProteinID:BAD07797.1	ProteinID:BAD09159.1	ProteinID:BAF09835.1	ProteinID:BAS80597.1	ProteinID:EEE57681.1
GO:GO:0000166	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004749	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005886	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009116
GO:GO:0009165	GO:GO:0009506	GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0046872	EnsemblPlantsGene:Os02g0714600	EnsemblPlants:Os02t0714600-01	PFAM:PF00156	PFAM:PF13793
InterPro:PRTase-like	InterPro:PRibTrfase_dom	PANTHER:PTHR10210	PANTHER:PTHR10210:SF34	InterPro:Pribosyltran_N	UniProt:Q6ZFT5
InterPro:Rib-P_diPkinase	SMART:SM01400	SUPFAM:SSF53271	TIGRFAMs:TIGR01251	UniParc:UPI00002367EC	RefSeq:XP_015625566.1
SEG:seg	:	:	:	:	:

Description

Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 4). (Os02t0714600-01);Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 4). (Os02t0714600-02)

Coordinates

chr2:+:29625540..29627758

Molecular Weight (calculated)

36150.5 Da

IEP (calculated)

6.785

GRAVY (calculated)

0.069

Length

325 amino acids

Sequence
(BLAST)

001: MEVVVARQPK AKKQINLFYC SECEELALKV AASSDTIHLQ SINWRSFDDG FPNLFINNAH DIRGQHVAFL ASFSSPSVIF EQISVIFALP KLFIASFTLV
101: LPFFPTGSFE RVEEEGDVAT AFTLARILSM IPKSRGGPTS VVIYDIHALQ ERFYFGDDVL PCFETGIPLL LQRLRQLPDA DNITIAFPDD GAWKRFHKLL
201: LNFPMVVCAK VREGDKRIVR IKEGNPEGRH VVIVDDLVQS GGTLRECQKV LAAHGAAKVS AYVTHAVFPK QSYERFTHTN SAGSADKFAY FWITDSCPQT
301: VKAINQQPPF EVLSLAGSIA DALQI

Best Arabidopsis Sequence Match ( AT2G42910.1 )
(BLAST)

001: MSENAANNIM ETKICTDAIV SELQKKKVHL FYCLECEELA RNIAAESDHI TLQSINWRSF ADGFPNLFIN NAHDIRGQHV AFLASFSSPA VIFEQISVIY
101: LLPRLFVASF TLVLPFFPTG SFERMEEEGD VATAFTMARI VSNIPISRGG PTSVVIYDIH ALQERFYFAD QVLPLFETGI PLLTKRLQQL PETEKVIVAF
201: PDDGAWKRFH KLLDHYPTVV CTKVREGDKR IVRLKEGNPA GCHVVIVDDL VQSGGTLIEC QKVLAAHGAV KVSAYVTHGV FPKSSWERFT HKKNGLEEAF
301: AYFWITDSCP QTVKAIGNKA PFEVLSLAGS IADALQI

Arabidopsis Description

PRS4Ribose-phosphate pyrophosphokinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q680A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.