Factsheet for Solyc10g007760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus

Predictor Summary:

cytosol 3
golgi 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
MultiLoc:	golgi
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 22364583
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g051930.2.1
Solyc07g056330.2.1
Solyc10g007760.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42910.1	Solyc07g056330.2.1	AT2G42910.1	21798944
AT2G42910.1	Solyc10g007760.2.1	AT2G42910.1	21798944
AT2G42910.1	Solyc06g051930.2.1	AT3G49160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054829	Potato	cytosol	95.96	97.78
Solyc07g056330.2.1	Tomato	cytosol, nucleus	88.82	89.38
VIT_12s0142g00090.t01	Wine grape	cytosol	84.47	83.44
AT2G42910.1	Thale cress	cytosol	83.23	79.53
KRG98919	Soybean	cytosol	78.57	79.06
GSMUA_Achr8P25470_001	Banana	cytosol, golgi, mitochondrion	77.95	78.68
Bra000280.1-P	Field mustard	cytosol	82.3	78.4
CDX83511	Canola	cytosol	83.23	78.36
KRH46053	Soybean	cytosol, nucleus	77.33	77.81
CDY60199	Canola	cytosol	82.3	77.71
Bra004730.1-P	Field mustard	cytosol	82.61	77.55
CDX79840	Canola	cytosol	82.61	77.55
GSMUA_Achr9P27600_001	Banana	cytosol	76.4	77.12
CDY42811	Canola	cytosol	73.29	76.38
Os02t0714600-01	Rice	cytosol, extracellular, nucleus, plasma membrane	76.4	75.69
Zm00001d051634_P001	Maize	cytosol	75.16	74.46
Zm00001d017833_P001	Maize	cytosol, extracellular, mitochondrion	75.16	74.46
EES07369	Sorghum	cytosol	75.47	73.19
Solyc04g039650.2.1	Tomato	plastid	16.46	67.09
TraesCS6D01G259800.1	Wheat	golgi, plastid, unclear	75.16	58.45
TraesCS6B01G308200.1	Wheat	plastid	75.16	58.31
TraesCS6A01G279400.1	Wheat	plastid	75.16	57.89
Solyc04g039620.2.1	Tomato	plastid	57.45	57.1
Solyc10g024410.1.1	Tomato	cytosol, nucleus	20.19	22.41
Solyc08g077200.2.1	Tomato	plastid	22.36	18.14
Solyc06g061040.2.1	Tomato	plastid	21.12	16.87

Protein Annotations

KEGG:00030+2.7.6.1	KEGG:00230+2.7.6.1	Gene3D:3.40.50.2020	MapMan:4.1.1.2.1	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0004749	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009116	GO:GO:0009165	GO:GO:0009987	GO:GO:0016740	UniProt:K4CXV5
PFAM:PF00156	PFAM:PF13793	InterPro:PRTase-like	InterPro:PRibTrfase_dom	PANTHER:PTHR10210	PANTHER:PTHR10210:SF34
InterPro:Pribosyltran_N	SMART:SM01400	SUPFAM:SSF53271	EnsemblPlantsGene:Solyc10g007760.2	EnsemblPlants:Solyc10g007760.2.1	UniParc:UPI000276B5B8

Description

No Description!

Coordinates

chr10:+:1994533..1999282

Molecular Weight (calculated)

36025.5 Da

IEP (calculated)

7.643

GRAVY (calculated)

0.025

Length

322 amino acids

Sequence
(BLAST)

001: MENSAMKKMK KQVLLYYCVE MEDVARKIAS ESDSITLHSI NWRSFADGFP NLFINNAHDI RGQHVAFLAS FSSPAVIFEQ LSVIFALPRL FVASFTLVLP
101: FFPTGTFERM EEEGDVATAF TMARIISNIP ISRGGPTSLV IYDIHALQER FYFGDNVLPL FETGIPLLKQ RLQQLPNSEK IVIAFPDDGA WKRFHKQLVH
201: YPTVICTKVR EGDKRIVRLK EGNPAGCHVV IVDDLVQSGG TLIECQKVLA SHGASKVSAY VTHGIFPNRS WERFLHKNDG SEKAFTYFWT TDSCPHTVKA
301: VANKAPFEVI SLAGSIADAL QI

Best Arabidopsis Sequence Match ( AT2G42910.1 )
(BLAST)

001: MSENAANNIM ETKICTDAIV SELQKKKVHL FYCLECEELA RNIAAESDHI TLQSINWRSF ADGFPNLFIN NAHDIRGQHV AFLASFSSPA VIFEQISVIY
101: LLPRLFVASF TLVLPFFPTG SFERMEEEGD VATAFTMARI VSNIPISRGG PTSVVIYDIH ALQERFYFAD QVLPLFETGI PLLTKRLQQL PETEKVIVAF
201: PDDGAWKRFH KLLDHYPTVV CTKVREGDKR IVRLKEGNPA GCHVVIVDDL VQSGGTLIEC QKVLAAHGAV KVSAYVTHGV FPKSSWERFT HKKNGLEEAF
301: AYFWITDSCP QTVKAIGNKA PFEVLSLAGS IADALQI

Arabidopsis Description

PRS4Ribose-phosphate pyrophosphokinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q680A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.