Factsheet for Solyc04g039650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
mitochondrion 7
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035565	Potato	cytosol	97.47	60.63
GSMUA_Achr2P14200_001	Banana	cytosol	72.15	18.81
Solyc10g007760.2.1	Tomato	extracellular, nucleus, plastid	67.09	16.46
VIT_00s0225g00140.t01	Wine grape	plastid	81.01	16.29
HORVU3Hr1G068700.3	Barley	cytosol	65.82	15.71
Zm00001d043600_P001	Maize	plastid	68.35	15.08
Solyc07g056330.2.1	Tomato	cytosol, nucleus	60.76	15.0
KRH74537	Soybean	endoplasmic reticulum, plastid	70.89	13.73
KRH69621	Soybean	plastid	69.62	13.48
CDX97905	Canola	plastid	68.35	13.2
AT1G10700.1	Thale cress	plastid	68.35	13.14
CDY19314	Canola	plastid	68.35	13.11
EES01390	Sorghum	plastid	67.09	13.02
Os01t0723600-01	Rice	plastid	67.09	12.96
TraesCS3D01G285500.2	Wheat	plastid	65.82	12.78
TraesCS3B01G319600.1	Wheat	plastid	65.82	12.78
TraesCS3A01G285700.1	Wheat	plastid	65.82	12.78
Bra019905.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	53.16	8.64
Solyc10g024410.1.1	Tomato	cytosol, nucleus	12.66	3.45
Solyc08g077200.2.1	Tomato	plastid	13.92	2.77
Solyc06g061040.2.1	Tomato	plastid	13.92	2.73
Solyc04g039620.2.1	Tomato	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc04g039650.2.1	EnsemblPlantsGene:Solyc04g039650.2	Gene3D:3.40.50.2020	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004749	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009165	GO:GO:0009987	GO:GO:0016740	InterPro:PRTase-like	PANTHER:PTHR10210	PANTHER:PTHR10210:SF45
SUPFAM:SSF53271	UniParc:UPI0002765FFE	UniProt:K4BRA4	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr4:-:13348391..13353128

Molecular Weight (calculated)

8837.6 Da

IEP (calculated)

9.907

GRAVY (calculated)

-0.310

Length

79 amino acids

Sequence
(BLAST)

1: MYKVLAKHGA QKISAYVTHG IFPNRSWQRF SHDKGGSPEN GMTYFWITDS CPQTVKEVKD KKPFEVLSLA APIAAALQI

Best Arabidopsis Sequence Match ( AT1G10700.1 )
(BLAST)

001: MAAISPANAT TAASLSLPQF SSTSSSLSSS SSPSFLNFKT ASVSNRCIKC GVRSLENHSG HRSLDFLSNG DPISLINPNS SSPITMAAAT SESGSKSSKR
101: VCLFHSDETR DLAERIVAKS DCIELRSINW KKFDDGFPNL FIQNAQGIRG QHVAFLASFS SPAVIFEQLS VIYALPKLFV SSFTLVLPFF PTGTSERMED
201: EGDVATAFTL ARILSNIPTS RGGPTSLVTF DIHALQERFY FGDTILPCFE SGIPLLKSRL QSLPDSDNIS IAFPDDGAWK RFHKQLQHYP TIVCNKVRMG
301: DKRIVRIKEG DAEGRHVVIV DDLVQSGGTL IECQKVLAAH GAAKISAYVT HGIFPRSSWK RFKLDTKGDP AEGLSYFWIT DSCGMTVKEV MNKPPFEVLS
401: LAGSIASALQ V

Arabidopsis Description

PRS3Ribose-phosphate pyrophosphokinase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93Z66]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.