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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 20363867
plastid: 22908117
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400062265 Potato plastid 99.5 99.5
Solyc10g024410.1.1 Tomato cytosol, nucleus 64.74 88.62
GSMUA_Achr11P... Banana cytosol, plastid 71.79 84.57
GSMUA_Achr2P12090_001 Banana cytosol, mitochondrion 69.02 82.53
CDY68772 Canola endoplasmic reticulum, golgi 67.25 80.42
KRH57590 Soybean nucleus 78.84 79.64
AT1G32380.1 Thale cress plastid 79.85 79.25
Bra023263.1-P Field mustard plastid 78.84 79.24
CDY01279 Canola plastid 78.84 78.84
CDX93837 Canola plastid 78.59 78.59
VIT_02s0012g00530.t01 Wine grape plastid 78.34 78.34
CDY31684 Canola plastid 78.34 77.94
AT2G35390.2 Thale cress plastid 79.09 77.92
Bra005344.1-P Field mustard plastid 78.09 77.69
CDX84209 Canola plastid 78.09 77.69
KRH04308 Soybean plastid 78.59 76.85
CDY32299 Canola plastid 78.59 76.85
HORVU6Hr1G015080.5 Barley mitochondrion 71.79 76.2
Os02t0127700-02 Rice plastid 72.04 72.22
Solyc06g061040.2.1 Tomato plastid 73.3 72.21
Zm00001d015115_P001 Maize plastid 71.54 71.18
TraesCS6A01G088200.2 Wheat nucleus 72.04 70.97
TraesCSU01G018200.1 Wheat plastid 72.04 70.97
EES06216 Sorghum plastid 71.03 70.85
TraesCS6B01G110600.1 Wheat plastid 72.04 70.79
Bra010159.1-P Field mustard plastid 27.96 48.68
Solyc10g007760.2.1 Tomato extracellular, nucleus, plastid 18.14 22.36
Solyc07g056330.2.1 Tomato cytosol, nucleus 17.88 22.19
Solyc04g039620.2.1 Tomato plastid 16.37 20.06
Solyc04g039650.2.1 Tomato plastid 2.77 13.92
Protein Annotations
KEGG:00030+2.7.6.1KEGG:00230+2.7.6.1Gene3D:3.40.50.2020MapMan:50.2.7GO:GO:0000287GO:GO:0003674
GO:GO:0003824GO:GO:0004749GO:GO:0005488GO:GO:0006139GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009116GO:GO:0009156GO:GO:0009165GO:GO:0009987GO:GO:0016740
GO:GO:0044249UniProt:K4CN80HAMAP:MF_00583_BPFAM:PF13793PFAM:PF14572InterPro:PRTase-like
InterPro:PRibTrfase_domInterPro:PRib_PP_synth_CSScanProsite:PS00114PANTHER:PTHR10210PANTHER:PTHR10210:SF54InterPro:Pribosyltran_N
InterPro:Rib-P_diPkinaseInterPro:Rib-P_diPkinase_bacSMART:SM01400SUPFAM:SSF53271EnsemblPlantsGene:Solyc08g077200.2EnsemblPlants:Solyc08g077200.2.1
TIGRFAMs:TIGR01251UniParc:UPI000276C2A1SEG:seg:::
Description
No Description!
Coordinates
chr8:+:61101856..61107524
Molecular Weight (calculated)
43174.1 Da
IEP (calculated)
8.204
GRAVY (calculated)
0.039
Length
397 amino acids
Sequence
(BLAST)
001: MASFLVLPSP SSASTSYSTP LFSSSRSFLT HKSFVPKRTC LRTSVNCEIS EPVNGKPRVP IINDGTLPKF LQASRLQNSV SRNNNRLKIF TGTANPSLSQ
101: EIAWYMGFEL GKVKIKRFAD GEIYVQLQES VRGCDVYLVQ STCPPANENL MELLVMIDAC RRASAKTITA VIPYFGYARA DRKTQGRESI GAKLVANLIT
201: EAGADRVLAC DLHSGQSMGY FDIPVDHVYC QPVVLDYLAS KKISSDDLVV VSPDVGGVAR ARAFAKKLSD APLAIVDKRR HGHNVAEVMN LIGDVKGKVA
301: VMVDDMIDTA GTIAKGAALL HQEGAREVYA CCTHAVFSPP AIERLSSGLF QEVIVTNTIP AIEKNCFPQL TVLSVANLLG ETIWRVHDDC SVSSIFQ
Best Arabidopsis Sequence Match ( AT1G32380.1 )
(BLAST)
001: MASLALTSPP SVKIPSYLSS SSSSLFSRSS ISFRTTESRS RICVSGYAKC NLPKALNGNA RVPIINETTI PKFFDSSRLE KSVSRNNTKL KLFSGTANPA
101: LSQEIAWYMG LELGKVSIKR FADGEIYVQL KESVRGCDVF LVQPTCTPTN ENLMELLIMV DACRRASAKK VTAVIPYFGY ARADRKTQGR ESIAAKLVAN
201: LITEAGADRV LACDLHSGQS MGYFDIPVDH VYCQPVILDY LASKSISSED LVVVSPDVGG VARARAFAKK LSDAPLAIVD KRRHGHNVAE VMNLIGDVKG
301: KVAVMVDDII DTAGTIVKGA ALLHEEGARE VYACCTHAVF SPPAIERLSS GLLQEVIVTN TLPVAEKNYF PQLTILSVAN LLGETIWRVH DDSSVSSIFL
Arabidopsis Description
PRS2Ribose-phosphate pyrophosphokinase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42583]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.