CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70737
CDX84994
CDX84995
CDX87453
CDY03849
CDY24397
CDY24398
CDY24399
CDY31621
CDY35849
CDY36104
CDY42101
CDY51132
CDY70440

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32380.1	CDX70737	AT1G25490.1	21798944
AT1G32380.1	CDX84994	AT1G25490.1	21798944
AT1G32380.1	CDX84995	AT1G25490.1	21798944
AT1G32380.1	CDX87453	AT1G25490.1	21798944
AT1G32380.1	CDY03849	AT1G25490.1	21798944
AT1G32380.1	CDY24397	AT1G25490.1	21798944
AT1G32380.1	CDY24398	AT1G25490.1	21798944
AT1G32380.1	CDY24399	AT1G25490.1	21798944
AT1G32380.1	CDY31621	AT1G25490.1	21798944
AT1G32380.1	CDY35849	AT1G25490.1	21798944
AT1G32380.1	CDY36104	AT1G25490.1	21798944
AT1G32380.1	CDY42101	AT1G25490.1	21798944
AT1G32380.1	CDY51132	AT1G25490.1	21798944
AT1G32380.1	CDY70440	AT1G25490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01279	Canola	plastid	93.84	95.97
CDX93837	Canola	plastid	93.35	95.47
AT1G32380.1	Thale cress	plastid	92.86	94.25
CDY68772	Canola	endoplasmic reticulum, golgi	72.41	88.55
CDY31684	Canola	plastid	84.73	86.22
CDX84209	Canola	plastid	84.48	85.96
GSMUA_Achr11P...	Banana	cytosol, plastid	67.24	81.01
GSMUA_Achr2P12090_001	Banana	cytosol, mitochondrion	65.27	79.82
KRH57590	Soybean	nucleus	76.35	78.88
Solyc08g077200.2.1	Tomato	plastid	76.85	78.59
PGSC0003DMT400062265	Potato	plastid	76.6	78.34
KRH04308	Soybean	plastid	75.86	75.86
VIT_02s0012g00530.t01	Wine grape	plastid	73.89	75.57
HORVU6Hr1G015080.5	Barley	mitochondrion	67.73	73.53
CDY30476	Canola	plastid	70.2	71.07
CDY23440	Canola	plastid	66.75	70.57
Os02t0127700-02	Rice	plastid	68.47	70.2
PGSC0003DMT400068395	Potato	plastid	68.97	70.0
Solyc06g061040.2.1	Tomato	plastid	69.21	69.73
Zm00001d015115_P001	Maize	plastid	68.23	69.42
EES06216	Sorghum	plastid	67.73	69.1
TraesCS6A01G088200.2	Wheat	nucleus	67.98	68.49
TraesCS6B01G110600.1	Wheat	plastid	67.73	68.07
TraesCSU01G018200.1	Wheat	plastid	67.49	67.99
CDY42811	Canola	cytosol	16.75	22.01
CDX83511	Canola	cytosol	18.23	21.64
CDX79840	Canola	cytosol	18.23	21.57
CDY60199	Canola	cytosol	17.98	21.41
CDY19314	Canola	plastid	18.72	18.45
CDX97905	Canola	plastid	17.98	17.85

Protein Annotations

KEGG:00030+2.7.6.1	KEGG:00230+2.7.6.1	Gene3D:3.40.50.2020	MapMan:50.2.7	GO:A0A078H4H3	UniProt:A0A078H4H3
EnsemblPlants:CDY32299	ProteinID:CDY32299	ProteinID:CDY32299.1	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004749	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009116	GO:GO:0009156	GO:GO:0009165	GO:GO:0009987	GO:GO:0016740	GO:GO:0044249
EnsemblPlantsGene:GSBRNA2T00051772001	HAMAP:MF_00583_B	PFAM:PF13793	PFAM:PF14572	InterPro:PRTase-like	InterPro:PRibTrfase_dom
InterPro:PRib_PP_synth_CS	ScanProsite:PS00114	PANTHER:PTHR10210	PANTHER:PTHR10210:SF54	InterPro:Pribosyltran_N	InterPro:Rib-P_diPkinase
InterPro:Rib-P_diPkinase_bac	SMART:SM01400	SUPFAM:SSF53271	TIGRFAMs:TIGR01251	UniPathway:UPA00087	UniParc:UPI0004EB9C59
SEG:seg	:	:	:	:	:

Description

BnaC05g28770DBnaC05g28770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4H3]

Coordinates

chrLK032291:-:290925..293204

Molecular Weight (calculated)

43522.7 Da

IEP (calculated)

8.467

GRAVY (calculated)

0.124

Length

406 amino acids

Sequence
(BLAST)

001: MASLALTSPP GVKVPSHLAS SSSSLISRSS ISFTTIESGS RICVSNSAKC NLPKALTLGN GNASIPIING TTLPKYLDSS SRLEKPVSSR RANTKLKLFS
101: GTANPALSQE IAWYMGLELG KISIKRFADG EVYVQLKESV RGCDVFLVQP TCTPTNENLM ELLIMVDACR RASAKKVTAV IPYFGYARAD RKTQGRESIA
201: AKLVANLITE AGVDRVLACD LHSGQSMGYF DIPVDHVYCQ PVILDYLASK SISSKDLVVV SPDVGGVARA RAFAKKLSDA PLAIVDKRRH GHNVAEVMNL
301: IGDVKGKVAV MVDDMIDTAG TIVKGAALLH EEGAREVYAC CTHAVFSPPA IERLSSGLLQ EVIVTNTLPV AEKNYFPQLT ILSVANLLGE TIWRVHDDSS
401: VSSIFL

Best Arabidopsis Sequence Match ( AT1G32380.1 )
(BLAST)

001: MASLALTSPP SVKIPSYLSS SSSSLFSRSS ISFRTTESRS RICVSGYAKC NLPKALNGNA RVPIINETTI PKFFDSSRLE KSVSRNNTKL KLFSGTANPA
101: LSQEIAWYMG LELGKVSIKR FADGEIYVQL KESVRGCDVF LVQPTCTPTN ENLMELLIMV DACRRASAKK VTAVIPYFGY ARADRKTQGR ESIAAKLVAN
201: LITEAGADRV LACDLHSGQS MGYFDIPVDH VYCQPVILDY LASKSISSED LVVVSPDVGG VARARAFAKK LSDAPLAIVD KRRHGHNVAE VMNLIGDVKG
301: KVAVMVDDII DTAGTIVKGA ALLHEEGARE VYACCTHAVF SPPAIERLSS GLLQEVIVTN TLPVAEKNYF PQLTILSVAN LLGETIWRVH DDSSVSSIFL

Arabidopsis Description

PRS2Ribose-phosphate pyrophosphokinase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42583]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.