CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68515
CDX79840
CDX83068
CDX83511
CDY42811
CDY60199
CDY69935

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42910.1	CDX79840	AT2G42910.1	21798944
AT2G42910.1	CDX83511	AT2G42910.1	21798944
AT2G42910.1	CDY42811	AT2G42910.1	21798944
AT2G42910.1	CDY60199	AT2G42910.1	21798944
AT2G42910.1	CDX68515	AT3G49160.1	21798944
AT2G42910.1	CDX83068	AT3G49160.1	21798944
AT2G42910.1	CDY69935	AT3G49160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42811	Canola	cytosol	88.6	98.06
Bra000280.1-P	Field mustard	cytosol	95.61	96.75
CDY60199	Canola	cytosol	94.15	94.43
AT2G42910.1	Thale cress	cytosol	92.69	94.07
CDX79840	Canola	cytosol	93.27	93.0
PGSC0003DMT400054829	Potato	cytosol	78.07	84.49
Solyc10g007760.2.1	Tomato	extracellular, nucleus, plastid	78.36	83.23
PGSC0003DMT400044713	Potato	cytosol	77.78	83.12
Solyc07g056330.2.1	Tomato	cytosol, nucleus	76.9	82.19
VIT_12s0142g00090.t01	Wine grape	cytosol	77.78	81.6
KRG98919	Soybean	cytosol	74.27	79.38
KRH46053	Soybean	cytosol, nucleus	73.98	79.06
Os02t0714600-01	Rice	cytosol, extracellular, nucleus, plasma membrane	74.85	78.77
GSMUA_Achr8P25470_001	Banana	cytosol, golgi, mitochondrion	73.1	78.37
GSMUA_Achr9P27600_001	Banana	cytosol	72.22	77.43
Zm00001d017833_P001	Maize	cytosol, extracellular, mitochondrion	73.39	77.23
Zm00001d051634_P001	Maize	cytosol	72.22	76.0
EES07369	Sorghum	cytosol	72.81	75.0
TraesCS6D01G259800.1	Wheat	golgi, plastid, unclear	72.81	60.14
TraesCS6B01G308200.1	Wheat	plastid	72.51	59.76
TraesCS6A01G279400.1	Wheat	plastid	72.81	59.57
CDX97905	Canola	plastid	66.96	55.99
CDY19314	Canola	plastid	66.96	55.58
CDY68772	Canola	endoplasmic reticulum, golgi	20.47	21.08
CDY01279	Canola	plastid	21.93	18.89
CDX93837	Canola	plastid	21.93	18.89
CDY31684	Canola	plastid	21.93	18.8
CDX84209	Canola	plastid	21.93	18.8
CDY32299	Canola	plastid	21.64	18.23
CDY30476	Canola	plastid	20.47	17.46
CDY23440	Canola	plastid	19.3	17.19

Protein Annotations

KEGG:00030+2.7.6.1	KEGG:00230+2.7.6.1	Gene3D:3.40.50.2020	MapMan:4.1.1.2.1	GO:A0A078D2C4	EnsemblPlants:CDX83511
ProteinID:CDX83511	ProteinID:CDX83511.1	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009116
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00139106001	PFAM:PF00156	PFAM:PF13793	InterPro:PRTase-like	InterPro:PRibTrfase_dom
PANTHER:PTHR10210	PANTHER:PTHR10210:SF34	InterPro:Pribosyltran_N	SMART:SM01400	SUPFAM:SSF53271	UniPathway:UPA00087
UniParc:UPI0004EF4635	SEG:seg	:	:	:	:

Description

BnaA03g19950D

Coordinates

chrLK031832:-:1874947..1876727

Molecular Weight (calculated)

38114.6 Da

IEP (calculated)

6.348

GRAVY (calculated)

-0.018

Length

342 amino acids

Sequence
(BLAST)

001: MSENAATNNN NNMEKNQAIC KEAIVSELQK KKVHLFYCLE CEELARNIAS ESDHITLQSI NWRSFADGFP NLFINNAHEI RGQHVAFLAS FSSPAVIFEQ
101: ISVIYLLPRL FVASFTLVLP FFPTGSFERM EEEGDVATAF TMARIVSNIP ISRGGPTSVV IYDIHALQER FYFADQVLPL FETGIPLLTK RLQQLPETEK
201: VIVAFPDDGA WKRFHKLLDQ YPTVVCTKVR EGDKRIVRLK EGNPAGCHVV IVDDLVQSGG TLIECQKVLA AHGAAKVSAY VTHGVFPKSS WERFTHKNNG
301: SEEAFAYFWI TDSCPQTVKS IGNKAPFEVL SLAGSIADAL QI

Best Arabidopsis Sequence Match ( AT2G42910.1 )
(BLAST)

001: MSENAANNIM ETKICTDAIV SELQKKKVHL FYCLECEELA RNIAAESDHI TLQSINWRSF ADGFPNLFIN NAHDIRGQHV AFLASFSSPA VIFEQISVIY
101: LLPRLFVASF TLVLPFFPTG SFERMEEEGD VATAFTMARI VSNIPISRGG PTSVVIYDIH ALQERFYFAD QVLPLFETGI PLLTKRLQQL PETEKVIVAF
201: PDDGAWKRFH KLLDHYPTVV CTKVREGDKR IVRLKEGNPA GCHVVIVDDL VQSGGTLIEC QKVLAAHGAV KVSAYVTHGV FPKSSWERFT HKKNGLEEAF
301: AYFWITDSCP QTVKAIGNKA PFEVLSLAGS IADALQI

Arabidopsis Description

PRS4Ribose-phosphate pyrophosphokinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q680A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.