Factsheet for TraesCS6A01G279400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G279400.1
TraesCS6B01G308200.1
TraesCS6D01G259800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42910.1	TraesCS6A01G279400.1	AT2G42910.1	21798944
AT2G42910.1	TraesCS6B01G308200.1	AT2G42910.1	21798944
AT2G42910.1	TraesCS6D01G259800.1	AT2G42910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G259800.1	Wheat	golgi, plastid, unclear	94.74	95.65
TraesCS6B01G308200.1	Wheat	plastid	91.63	92.29
Os02t0714600-01	Rice	cytosol, extracellular, nucleus, plasma membrane	69.62	89.54
Zm00001d051634_P001	Maize	cytosol	67.46	86.77
Zm00001d017833_P001	Maize	cytosol, extracellular, mitochondrion	67.46	86.77
GSMUA_Achr8P25470_001	Banana	cytosol, golgi, mitochondrion	64.59	84.64
EES07369	Sorghum	cytosol	66.99	84.34
GSMUA_Achr9P27600_001	Banana	cytosol	62.92	82.45
VIT_12s0142g00090.t01	Wine grape	cytosol	60.29	77.3
PGSC0003DMT400054829	Potato	cytosol	58.37	77.22
KRG98919	Soybean	cytosol	57.89	75.62
KRH46053	Soybean	cytosol, nucleus	57.66	75.31
Solyc10g007760.2.1	Tomato	extracellular, nucleus, plastid	57.89	75.16
Solyc07g056330.2.1	Tomato	cytosol, nucleus	57.18	74.69
AT2G42910.1	Thale cress	cytosol	59.81	74.18
PGSC0003DMT400044713	Potato	cytosol	56.7	74.06
Bra000280.1-P	Field mustard	cytosol	59.33	73.37
CDY60199	Canola	cytosol	59.81	73.31
CDX79840	Canola	cytosol	59.81	72.89
Bra004730.1-P	Field mustard	cytosol	59.81	72.89
CDX83511	Canola	cytosol	59.57	72.81
CDY42811	Canola	cytosol	51.91	70.23
TraesCS3A01G285700.1	Wheat	plastid	55.98	57.49
TraesCS6A01G088200.2	Wheat	nucleus	19.14	19.85
TraesCS7A01G402500.1	Wheat	plastid	18.18	19.0
TraesCS5A01G546100.1	Wheat	plastid	17.22	18.37

Protein Annotations

KEGG:00030+2.7.6.1	KEGG:00230+2.7.6.1	Gene3D:3.40.50.2020	MapMan:4.1.1.2.1	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0004749	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009116	GO:GO:0009165	GO:GO:0009506	GO:GO:0009987	GO:GO:0016020
GO:GO:0016740	PFAM:PF00156	PFAM:PF13793	InterPro:PRTase-like	InterPro:PRibTrfase_dom	PANTHER:PTHR10210
PANTHER:PTHR10210:SF34	InterPro:Pribosyltran_N	InterPro:Rib-P_diPkinase	SMART:SM01400	SUPFAM:SSF53271	TIGRFAMs:TIGR01251
EnsemblPlantsGene:TraesCS6A01G279400	EnsemblPlants:TraesCS6A01G279400.1	TIGR:cd06223	SEG:seg	:	:

Description

No Description!

Coordinates

chr6A:+:507089941..507092235

Molecular Weight (calculated)

45175.0 Da

IEP (calculated)

7.724

GRAVY (calculated)

0.051

Length

418 amino acids

Sequence
(BLAST)

001: MLPSATATNT YSYCPGSGAA AGGLGFSRAA IIGRPRGESN RYSRPRTTCL AARVSIPPTS SPSEPLPTRR SPVPAPAAAA AAPCRDEMEV AAAAAAVAVP
101: RHKVKKQINL FYCAECEELA LKVAAASDAI QLQSINWRNF PDGFPNLFIN NAHDIRGQHV AFLASFSSPA IIFEQISVIF ALPKLFIASF TLVLPFFPTG
201: TFERVEEEGD VATAFTLARI LSMIPKSRGG PTSVVIYDIH ALQERFYFGD DVLPCFETGI PLLLQRLSQL PDADNVTIAF PDDGAWKRFH KSLANFPVVV
301: CAKVREGDKR IVRIKEGNPE GRHVVIVDDL VQSGGTLREC QKVLAAHGAT KVSAYVTHAV FPNQSYERFM TANSAGPGDQ FAYFWITDSC PQTVKAISQQ
401: SPFEVLSLAS SIADALQI

Best Arabidopsis Sequence Match ( AT2G42910.1 )
(BLAST)

001: MSENAANNIM ETKICTDAIV SELQKKKVHL FYCLECEELA RNIAAESDHI TLQSINWRSF ADGFPNLFIN NAHDIRGQHV AFLASFSSPA VIFEQISVIY
101: LLPRLFVASF TLVLPFFPTG SFERMEEEGD VATAFTMARI VSNIPISRGG PTSVVIYDIH ALQERFYFAD QVLPLFETGI PLLTKRLQQL PETEKVIVAF
201: PDDGAWKRFH KLLDHYPTVV CTKVREGDKR IVRLKEGNPA GCHVVIVDDL VQSGGTLIEC QKVLAAHGAV KVSAYVTHGV FPKSSWERFT HKKNGLEEAF
301: AYFWITDSCP QTVKAIGNKA PFEVLSLAGS IADALQI

Arabidopsis Description

PRS4Ribose-phosphate pyrophosphokinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q680A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.