Factsheet for PGSC0003DMT400054829

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
golgi 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
MultiLoc:	golgi
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400044713
PGSC0003DMT400050451
PGSC0003DMT400054829

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42910.1	PGSC0003DMT400044713	AT2G42910.1	21798944
AT2G42910.1	PGSC0003DMT400054829	AT2G42910.1	21798944
AT2G42910.1	PGSC0003DMT400050451	AT3G49160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g007760.2.1	Tomato	extracellular, nucleus, plastid	97.78	95.96
PGSC0003DMT400044713	Potato	cytosol	90.51	89.38
VIT_12s0142g00090.t01	Wine grape	cytosol	86.39	83.74
AT2G42910.1	Thale cress	cytosol	84.49	79.23
KRG98919	Soybean	cytosol	80.06	79.06
GSMUA_Achr8P25470_001	Banana	cytosol, golgi, mitochondrion	79.43	78.68
KRH46053	Soybean	cytosol, nucleus	79.11	78.12
Bra000280.1-P	Field mustard	cytosol	83.54	78.11
CDX83511	Canola	cytosol	84.49	78.07
GSMUA_Achr9P27600_001	Banana	cytosol	78.48	77.74
CDY60199	Canola	cytosol	83.54	77.42
Bra004730.1-P	Field mustard	cytosol	83.54	76.97
CDX79840	Canola	cytosol	83.54	76.97
Os02t0714600-01	Rice	cytosol, extracellular, nucleus, plasma membrane	78.48	76.31
CDY42811	Canola	cytosol	74.37	76.05
Zm00001d017833_P001	Maize	cytosol, extracellular, mitochondrion	76.9	74.77
Zm00001d051634_P001	Maize	cytosol	76.58	74.46
EES07369	Sorghum	cytosol	76.9	73.19
PGSC0003DMT400035565	Potato	cytosol	28.16	70.08
TraesCS6D01G259800.1	Wheat	golgi, plastid, unclear	77.22	58.94
TraesCS6B01G308200.1	Wheat	plastid	77.22	58.8
TraesCS6A01G279400.1	Wheat	plastid	77.22	58.37
PGSC0003DMT400062265	Potato	plastid	22.78	18.14
PGSC0003DMT400056411	Potato	plastid	22.47	17.93
PGSC0003DMT400068395	Potato	plastid	22.15	17.5

Protein Annotations

Gene3D:3.40.50.2020	MapMan:4.1.1.2.1	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004749
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009116
GO:GO:0009165	GO:GO:0009987	GO:GO:0016740	UniProt:M1BWY1	PFAM:PF00156	EnsemblPlantsGene:PGSC0003DMG400021283
PGSC:PGSC0003DMG400021283	EnsemblPlants:PGSC0003DMT400054829	InterPro:PRTase-like	InterPro:PRibTrfase_dom	PANTHER:PTHR10210	PANTHER:PTHR10210:SF34
SMART:SM01400	SUPFAM:SSF53271	UniParc:UPI000295047A	:	:	:

Description

Ribose-phosphate pyrophosphokinase 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400021283]

Coordinates

chr10:+:2735009..2738943

Molecular Weight (calculated)

35367.7 Da

IEP (calculated)

7.375

GRAVY (calculated)

0.059

Length

316 amino acids

Sequence
(BLAST)

001: MKKKKQVLLY YCVEMEDVAR KIASESDSII LHSINWRSFA DGFPNLFINN AHDIRGQHVA FLASFSSPAV IFEQLSVIFA LPRLFVASFT LVLPFFPTGT
101: FERMEEEGDV ATAFTMARII SNIPISRGGP TSLVIYDIHA LQERFYFGDH VLPLFETGIP LLKQRLQQLP DSEKIVIAFP DDGAWKRFHK QLVHYPTVIC
201: TKVREGDKRI VRLKEGNPAG CHVVIVDDLV QSGGTLIECQ KVLAAHGASK VSAYVTHGIF PNRSWERFLH KNDGSEKAFT YFWTTDSCPH TVKAVANNAP
301: FEVISLAGSI ADALQI

Best Arabidopsis Sequence Match ( AT2G42910.1 )
(BLAST)

001: MSENAANNIM ETKICTDAIV SELQKKKVHL FYCLECEELA RNIAAESDHI TLQSINWRSF ADGFPNLFIN NAHDIRGQHV AFLASFSSPA VIFEQISVIY
101: LLPRLFVASF TLVLPFFPTG SFERMEEEGD VATAFTMARI VSNIPISRGG PTSVVIYDIH ALQERFYFAD QVLPLFETGI PLLTKRLQQL PETEKVIVAF
201: PDDGAWKRFH KLLDHYPTVV CTKVREGDKR IVRLKEGNPA GCHVVIVDDL VQSGGTLIEC QKVLAAHGAV KVSAYVTHGV FPKSSWERFT HKKNGLEEAF
301: AYFWITDSCP QTVKAIGNKA PFEVLSLAGS IADALQI

Arabidopsis Description

PRS4Ribose-phosphate pyrophosphokinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q680A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.