Factsheet for TraesCS6D01G259800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid, unclear
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G279400.1
TraesCS6B01G308200.1
TraesCS6D01G259800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42910.1	TraesCS6A01G279400.1	AT2G42910.1	21798944
AT2G42910.1	TraesCS6B01G308200.1	AT2G42910.1	21798944
AT2G42910.1	TraesCS6D01G259800.1	AT2G42910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G279400.1	Wheat	plastid	95.65	94.74
TraesCS6B01G308200.1	Wheat	plastid	93.0	92.77
Os02t0714600-01	Rice	cytosol, extracellular, nucleus, plasma membrane	70.53	89.85
Zm00001d051634_P001	Maize	cytosol	68.36	87.08
Zm00001d017833_P001	Maize	cytosol, extracellular, mitochondrion	68.36	87.08
GSMUA_Achr8P25470_001	Banana	cytosol, golgi, mitochondrion	65.22	84.64
EES07369	Sorghum	cytosol	67.87	84.64
GSMUA_Achr9P27600_001	Banana	cytosol	63.53	82.45
PGSC0003DMT400054829	Potato	cytosol	58.94	77.22
VIT_12s0142g00090.t01	Wine grape	cytosol	60.63	76.99
KRG98919	Soybean	cytosol	58.45	75.62
KRH46053	Soybean	cytosol, nucleus	58.21	75.31
Solyc10g007760.2.1	Tomato	extracellular, nucleus, plastid	58.45	75.16
Solyc07g056330.2.1	Tomato	cytosol, nucleus	57.73	74.69
AT2G42910.1	Thale cress	cytosol	60.39	74.18
PGSC0003DMT400044713	Potato	cytosol	57.25	74.06
Bra000280.1-P	Field mustard	cytosol	59.9	73.37
CDY60199	Canola	cytosol	60.39	73.31
CDX79840	Canola	cytosol	60.39	72.89
Bra004730.1-P	Field mustard	cytosol	60.39	72.89
CDX83511	Canola	cytosol	60.14	72.81
CDY42811	Canola	cytosol	52.42	70.23
TraesCS3D01G285500.2	Wheat	plastid	56.52	57.49
TraesCS7D01G396300.1	Wheat	plastid	18.36	18.95

Protein Annotations

KEGG:00030+2.7.6.1	KEGG:00230+2.7.6.1	Gene3D:3.40.50.2020	MapMan:4.1.1.2.1	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0004749	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009116	GO:GO:0009165	GO:GO:0009506	GO:GO:0009987	GO:GO:0016020
GO:GO:0016740	PFAM:PF00156	PFAM:PF13793	InterPro:PRTase-like	InterPro:PRibTrfase_dom	PANTHER:PTHR10210
PANTHER:PTHR10210:SF34	InterPro:Pribosyltran_N	InterPro:Rib-P_diPkinase	SMART:SM01400	SUPFAM:SSF53271	TIGRFAMs:TIGR01251
EnsemblPlantsGene:TraesCS6D01G259800	EnsemblPlants:TraesCS6D01G259800.1	TIGR:cd06223	SEG:seg	:	:

Description

No Description!

Coordinates

chr6D:+:366535880..366538234

Molecular Weight (calculated)

44803.6 Da

IEP (calculated)

7.809

GRAVY (calculated)

0.051

Length

414 amino acids

Sequence
(BLAST)

001: MLASATATNS YWTGAAAGGL GFSRAAIIGR PKGESNRYSR SRTTCLAARV SIPPTPSPSE PLPTRRSPVP APPAAAAAAP RDEMEVAAAA AAVAVPRHKV
101: KKQINLFYCA ECEELALKVA AASDAIQLQS INWRNFPDGF PNLFINNAHD IRGQHVAFLA SFSSPAIIFE QISVIFALPK LFIASFTLVL PFFPTGTFER
201: VEEEGDVATA FTLARILSMI PKSRGGPTSV VIYDIHALQE RFYFGDDVLP CFETGIPLLL QRLSQLPDAD NVTIAFPDDG AWKRFHKSLA NFPVVVCAKV
301: REGDKRIVRI KEGNPEGRHV VIVDDLVQSG GTLRECQKVL AAHGATKVSA YVTHAVFPNQ SYERFMTANS AGPGDQFAYF WITDSCPQTV KAISQQPPFE
401: VLSLASSIAD ALQI

Best Arabidopsis Sequence Match ( AT2G42910.1 )
(BLAST)

001: MSENAANNIM ETKICTDAIV SELQKKKVHL FYCLECEELA RNIAAESDHI TLQSINWRSF ADGFPNLFIN NAHDIRGQHV AFLASFSSPA VIFEQISVIY
101: LLPRLFVASF TLVLPFFPTG SFERMEEEGD VATAFTMARI VSNIPISRGG PTSVVIYDIH ALQERFYFAD QVLPLFETGI PLLTKRLQQL PETEKVIVAF
201: PDDGAWKRFH KLLDHYPTVV CTKVREGDKR IVRLKEGNPA GCHVVIVDDL VQSGGTLIEC QKVLAAHGAV KVSAYVTHGV FPKSSWERFT HKKNGLEEAF
301: AYFWITDSCP QTVKAIGNKA PFEVLSLAGS IADALQI

Arabidopsis Description

PRS4Ribose-phosphate pyrophosphokinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q680A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.