Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, golgi, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- golgi 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr7P10730_001 | |
| GSMUA_Achr8P25470_001 | |
| GSMUA_Achr9P27600_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G42910.1 | GSMUA_Achr8P25470_001 | AT2G42910.1 | 21798944 |
| AT2G42910.1 | GSMUA_Achr9P27600_001 | AT2G42910.1 | 21798944 |
| AT2G42910.1 | GSMUA_Achr7P10730_001 | AT3G49160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P27600_001 | Banana | cytosol | 90.6 | 90.6 |
| Os02t0714600-01 | Rice | cytosol, extracellular, nucleus, plasma membrane | 86.21 | 84.62 |
| Zm00001d051634_P001 | Maize | cytosol | 83.07 | 81.54 |
| Zm00001d017833_P001 | Maize | cytosol, extracellular, mitochondrion | 82.76 | 81.23 |
| EES07369 | Sorghum | cytosol | 84.33 | 81.02 |
| VIT_12s0142g00090.t01 | Wine grape | cytosol | 82.45 | 80.67 |
| PGSC0003DMT400054829 | Potato | cytosol | 78.68 | 79.43 |
| Solyc10g007760.2.1 | Tomato | extracellular, nucleus, plastid | 78.68 | 77.95 |
| GSMUA_Achr2P14200_001 | Banana | cytosol | 73.67 | 77.56 |
| PGSC0003DMT400044713 | Potato | cytosol | 77.74 | 77.5 |
| KRG98919 | Soybean | cytosol | 77.12 | 76.88 |
| Solyc07g056330.2.1 | Tomato | cytosol, nucleus | 77.12 | 76.88 |
| KRH46053 | Soybean | cytosol, nucleus | 76.18 | 75.94 |
| AT2G42910.1 | Thale cress | cytosol | 78.68 | 74.48 |
| Bra000280.1-P | Field mustard | cytosol | 78.37 | 73.96 |
| CDX83511 | Canola | cytosol | 78.37 | 73.1 |
| CDY60199 | Canola | cytosol | 77.43 | 72.43 |
| CDX79840 | Canola | cytosol | 77.43 | 72.01 |
| Bra004730.1-P | Field mustard | cytosol | 77.43 | 72.01 |
| CDY42811 | Canola | cytosol | 69.28 | 71.52 |
| TraesCS6D01G259800.1 | Wheat | golgi, plastid, unclear | 84.64 | 65.22 |
| TraesCS6B01G308200.1 | Wheat | plastid | 84.33 | 64.82 |
| TraesCS6A01G279400.1 | Wheat | plastid | 84.64 | 64.59 |
| GSMUA_Achr11P... | Banana | cytosol, plastid | 20.69 | 19.58 |
| GSMUA_Achr2P12090_001 | Banana | cytosol, mitochondrion | 20.06 | 19.28 |
| GSMUA_Achr3P03780_001 | Banana | endoplasmic reticulum, vacuole | 21.63 | 18.3 |
Protein Annotations
| KEGG:00030+2.7.6.1 | KEGG:00230+2.7.6.1 | Gene3D:3.40.50.2020 | MapMan:4.1.1.2.1 | GO:GO:0000287 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004749 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009116 | GO:GO:0009165 | GO:GO:0009987 | GO:GO:0016740 | EnsemblPlantsGene:GSMUA_Achr8G25470_001 |
| EnsemblPlants:GSMUA_Achr8P25470_001 | EnsemblPlants:GSMUA_Achr8T25470_001 | UniProt:M0TTK0 | PFAM:PF00156 | PFAM:PF13793 | InterPro:PRTase-like |
| InterPro:PRibTrfase_dom | PANTHER:PTHR10210 | PANTHER:PTHR10210:SF34 | InterPro:Pribosyltran_N | SMART:SM01400 | SUPFAM:SSF53271 |
| TMHMM:TMhelix | UniParc:UPI0002948456 | : | : | : | : |
Description
Ribose-phosphate pyrophosphokinase 4 [Source:GMGC_GENE;Acc:GSMUA_Achr8G25470_001]
Coordinates
chr8:+:29345999..29351298
Molecular Weight (calculated)
35667.0 Da
IEP (calculated)
6.792
GRAVY (calculated)
0.045
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKRAKKQIN LFYCAESEEL ARKVADHSDV IQLQTITWRN FDDGFPNLFI NNAHDIRGQH VAFLASFSSP GVIFEQISAI FALPKLFISS FTLVLPFFPT
101: GSFERMEEEG DVATAFTMAR ILSMIPKSRG GPTSIVIYDI HALQERFYFG DDVLPCFETG IPLLLQRLHE LPDADNITIA FPDDGAWKRF HKLLMHFPMV
201: VCAKVREGDK RIVRIKEGNP EGRHVVIVDD LVQSGGTLIE CQKVLAAHGA GKVSAYVTHG VFPKRSWERF LHNNAEGSDH QFAYFWITDS CPLTVKAIAN
301: KAPFEVLSLA GSIATALQI
101: GSFERMEEEG DVATAFTMAR ILSMIPKSRG GPTSIVIYDI HALQERFYFG DDVLPCFETG IPLLLQRLHE LPDADNITIA FPDDGAWKRF HKLLMHFPMV
201: VCAKVREGDK RIVRIKEGNP EGRHVVIVDD LVQSGGTLIE CQKVLAAHGA GKVSAYVTHG VFPKRSWERF LHNNAEGSDH QFAYFWITDS CPLTVKAIAN
301: KAPFEVLSLA GSIATALQI
001: MSENAANNIM ETKICTDAIV SELQKKKVHL FYCLECEELA RNIAAESDHI TLQSINWRSF ADGFPNLFIN NAHDIRGQHV AFLASFSSPA VIFEQISVIY
101: LLPRLFVASF TLVLPFFPTG SFERMEEEGD VATAFTMARI VSNIPISRGG PTSVVIYDIH ALQERFYFAD QVLPLFETGI PLLTKRLQQL PETEKVIVAF
201: PDDGAWKRFH KLLDHYPTVV CTKVREGDKR IVRLKEGNPA GCHVVIVDDL VQSGGTLIEC QKVLAAHGAV KVSAYVTHGV FPKSSWERFT HKKNGLEEAF
301: AYFWITDSCP QTVKAIGNKA PFEVLSLAGS IADALQI
101: LLPRLFVASF TLVLPFFPTG SFERMEEEGD VATAFTMARI VSNIPISRGG PTSVVIYDIH ALQERFYFAD QVLPLFETGI PLLTKRLQQL PETEKVIVAF
201: PDDGAWKRFH KLLDHYPTVV CTKVREGDKR IVRLKEGNPA GCHVVIVDDL VQSGGTLIEC QKVLAAHGAV KVSAYVTHGV FPKSSWERFT HKKNGLEEAF
301: AYFWITDSCP QTVKAIGNKA PFEVLSLAGS IADALQI
Arabidopsis Description
PRS4Ribose-phosphate pyrophosphokinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q680A5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.