CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68515
CDX79840
CDX83068
CDX83511
CDY42811
CDY60199
CDY69935

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42910.1	CDX79840	AT2G42910.1	21798944
AT2G42910.1	CDX83511	AT2G42910.1	21798944
AT2G42910.1	CDY42811	AT2G42910.1	21798944
AT2G42910.1	CDY60199	AT2G42910.1	21798944
AT2G42910.1	CDX68515	AT3G49160.1	21798944
AT2G42910.1	CDX83068	AT3G49160.1	21798944
AT2G42910.1	CDY69935	AT3G49160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83511	Canola	cytosol	98.06	88.6
Bra000280.1-P	Field mustard	cytosol	94.17	86.09
CDY60199	Canola	cytosol	92.56	83.87
AT2G42910.1	Thale cress	cytosol	90.61	83.09
CDX79840	Canola	cytosol	90.61	81.63
PGSC0003DMT400054829	Potato	cytosol	76.05	74.37
Solyc10g007760.2.1	Tomato	extracellular, nucleus, plastid	76.38	73.29
PGSC0003DMT400044713	Potato	cytosol	75.73	73.12
Solyc07g056330.2.1	Tomato	cytosol, nucleus	75.08	72.5
VIT_12s0142g00090.t01	Wine grape	cytosol	75.08	71.17
KRG98919	Soybean	cytosol	72.17	69.69
Os02t0714600-01	Rice	cytosol, extracellular, nucleus, plasma membrane	73.14	69.54
KRH46053	Soybean	cytosol, nucleus	71.84	69.38
GSMUA_Achr8P25470_001	Banana	cytosol, golgi, mitochondrion	71.52	69.28
Zm00001d017833_P001	Maize	cytosol, extracellular, mitochondrion	71.52	68.0
GSMUA_Achr9P27600_001	Banana	cytosol	69.58	67.4
Zm00001d051634_P001	Maize	cytosol	70.55	67.08
EES07369	Sorghum	cytosol	70.87	65.96
TraesCS6D01G259800.1	Wheat	golgi, plastid, unclear	70.23	52.42
TraesCS6B01G308200.1	Wheat	plastid	69.9	52.05
TraesCS6A01G279400.1	Wheat	plastid	70.23	51.91
CDX97905	Canola	plastid	66.02	49.88
CDY19314	Canola	plastid	66.02	49.51
CDY68772	Canola	endoplasmic reticulum, golgi	20.06	18.67
CDY31684	Canola	plastid	22.33	17.29
CDX84209	Canola	plastid	22.33	17.29
CDY01279	Canola	plastid	22.01	17.13
CDX93837	Canola	plastid	21.68	16.88
CDY32299	Canola	plastid	22.01	16.75
CDY30476	Canola	plastid	20.06	15.46
CDY23440	Canola	plastid	18.77	15.1

Protein Annotations

KEGG:00030+2.7.6.1	KEGG:00230+2.7.6.1	Gene3D:3.40.50.2020	MapMan:4.1.1.2.1	GO:A0A078HYR8	UniProt:A0A078HYR8
EnsemblPlants:CDY42811	ProteinID:CDY42811	ProteinID:CDY42811.1	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004749	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009116	GO:GO:0009165	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00075490001	PFAM:PF00156
PFAM:PF13793	InterPro:PRTase-like	InterPro:PRibTrfase_dom	PANTHER:PTHR10210	PANTHER:PTHR10210:SF34	InterPro:Pribosyltran_N
SMART:SM01400	SUPFAM:SSF53271	UniPathway:UPA00087	UniParc:UPI0004EF2BAA	:	:

Description

BnaC03g23950DBnaC03g23950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HYR8]

Coordinates

chrLK032535:-:111907..113976

Molecular Weight (calculated)

34574.4 Da

IEP (calculated)

6.239

GRAVY (calculated)

-0.056

Length

309 amino acids

Sequence
(BLAST)

001: MSENAANNNN SIMEKNQAIC KEAIVSELQK KKVHLFYCLE CEELARNIAS ESDHITLQSI NWRSFADGFP NLFINNAHEI RGQHVAFLAS FSSPAVIFEQ
101: ISVIYLLPRL FVASFTLVLP FFPTGSFERM EEEGDERFYF ADQVLPLFET GIPLLTKRLQ QLPETEKIIV AFPDDGAWKR FHKLLDQYPT VVCTKVREGD
201: KRIVRLKEGN PAGCHVVIVD DLVQSGGTLI ECQKVLAAHG AAKVSAYVTH GVFPKSSWER FTHKNNGSEE AFAYFWITDS CPQTVKSIGN KAPFEVLSLA
301: GSIAGALQI

Best Arabidopsis Sequence Match ( AT2G42910.1 )
(BLAST)

001: MSENAANNIM ETKICTDAIV SELQKKKVHL FYCLECEELA RNIAAESDHI TLQSINWRSF ADGFPNLFIN NAHDIRGQHV AFLASFSSPA VIFEQISVIY
101: LLPRLFVASF TLVLPFFPTG SFERMEEEGD VATAFTMARI VSNIPISRGG PTSVVIYDIH ALQERFYFAD QVLPLFETGI PLLTKRLQQL PETEKVIVAF
201: PDDGAWKRFH KLLDHYPTVV CTKVREGDKR IVRLKEGNPA GCHVVIVDDL VQSGGTLIEC QKVLAAHGAV KVSAYVTHGV FPKSSWERFT HKKNGLEEAF
301: AYFWITDSCP QTVKAIGNKA PFEVLSLAGS IADALQI

Arabidopsis Description

PRS4Ribose-phosphate pyrophosphokinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q680A5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.